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Items: 1 to 20 of 87

1.

Accessibility of microRNA binding sites in metastable RNA secondary structures in the presence of SNPs.

Day L, Abdelhadi Ep Souki O, Albrecht AA, Steinhöfel K.

Bioinformatics. 2014 Feb 1;30(3):343-52. doi: 10.1093/bioinformatics/btt695. Epub 2013 Nov 30.

PMID:
24292936
2.

MicroRNA-mediated regulation of gene expression is affected by disease-associated SNPs within the 3'-UTR via altered RNA structure.

Haas U, Sczakiel G, Laufer SD.

RNA Biol. 2012 Jun;9(6):924-37. doi: 10.4161/rna.20497. Epub 2012 Jun 1.

3.

Polymorphisms in microRNA target sites influence susceptibility to schizophrenia by altering the binding of miRNAs to their targets.

Gong Y, Wu CN, Xu J, Feng G, Xing QH, Fu W, Li C, He L, Zhao XZ.

Eur Neuropsychopharmacol. 2013 Oct;23(10):1182-9. doi: 10.1016/j.euroneuro.2012.12.002. Epub 2013 Jan 16.

PMID:
23332465
4.

mrSNP: software to detect SNP effects on microRNA binding.

Deveci M, Catalyürek UV, Toland AE.

BMC Bioinformatics. 2014 Mar 15;15:73. doi: 10.1186/1471-2105-15-73.

5.

MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs.

Liu C, Zhang F, Li T, Lu M, Wang L, Yue W, Zhang D.

BMC Genomics. 2012 Nov 23;13:661. doi: 10.1186/1471-2164-13-661.

6.

An NTD-associated polymorphism in the 3' UTR of MTHFD1L can affect disease risk by altering miRNA binding.

Minguzzi S, Selcuklu SD, Spillane C, Parle-McDermott A.

Hum Mutat. 2014 Jan;35(1):96-104. doi: 10.1002/humu.22459.

PMID:
24123340
7.

Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers.

Yu Z, Li Z, Jolicoeur N, Zhang L, Fortin Y, Wang E, Wu M, Shen SH.

Nucleic Acids Res. 2007;35(13):4535-41. Epub 2007 Jun 21.

8.
9.

Natural selection on human microRNA binding sites inferred from SNP data.

Chen K, Rajewsky N.

Nat Genet. 2006 Dec;38(12):1452-6. Epub 2006 Oct 29.

PMID:
17072316
10.

In silico analysis of miRNA-mediated gene regulation in OCA and OA genes.

Kamaraj B, Gopalakrishnan C, Purohit R.

Cell Biochem Biophys. 2014 Dec;70(3):1923-32. doi: 10.1007/s12013-014-0152-9.

PMID:
25060099
11.

Polymorphisms in lipid metabolism related miRNA binding sites and risk of metabolic syndrome.

Ye Q, Zhao X, Xu K, Li Q, Cheng J, Gao Y, Du J, Shi H, Zhou L.

Gene. 2013 Oct 10;528(2):132-8. doi: 10.1016/j.gene.2013.07.036. Epub 2013 Jul 31.

PMID:
23911300
12.

MiR-196a binding-site SNP regulates RAP1A expression contributing to esophageal squamous cell carcinoma risk and metastasis.

Wang K, Li J, Guo H, Xu X, Xiong G, Guan X, Liu B, Li J, Chen X, Yang K, Bai Y.

Carcinogenesis. 2012 Nov;33(11):2147-54. doi: 10.1093/carcin/bgs259. Epub 2012 Aug 1.

PMID:
22859270
13.

A microRNA-7 binding site polymorphism in HOXB5 leads to differential gene expression in bladder cancer.

Luo J, Cai Q, Wang W, Huang H, Zeng H, He W, Deng W, Yu H, Chan E, Ng CF, Huang J, Lin T.

PLoS One. 2012;7(6):e40127. doi: 10.1371/journal.pone.0040127. Epub 2012 Jun 29.

14.

Analysis of miRNAs Targeting 3'UTR of H2AFX Gene: a General in Silico Approach.

Sabina S, Vecoli C, Borghini A, Guarino R, Andreassi MG.

Microrna. 2015;4(1):41-9.

PMID:
25738604
15.

Germline hereditary, somatic mutations and microRNAs targeting-SNPs in congenital heart defects.

Sabina S, Pulignani S, Rizzo M, Cresci M, Vecoli C, Foffa I, Ait-Ali L, Pitto L, Andreassi MG.

J Mol Cell Cardiol. 2013 Jul;60:84-9. doi: 10.1016/j.yjmcc.2013.04.002. Epub 2013 Apr 11.

PMID:
23583740
16.

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis.

Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY.

Hum Mutat. 2012 Jan;33(1):254-63. doi: 10.1002/humu.21641. Epub 2011 Nov 23.

PMID:
22045659
17.

CLIP-based prediction of mammalian microRNA binding sites.

Liu C, Mallick B, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y.

Nucleic Acids Res. 2013 Aug;41(14):e138. doi: 10.1093/nar/gkt435. Epub 2013 May 22.

18.

Solution structure of miRNA:mRNA complex.

Cevec M, Plavec J.

Methods Mol Biol. 2010;667:251-65. doi: 10.1007/978-1-60761-811-9_17.

PMID:
20827539
19.

miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines.

Zhang W, Edwards A, Zhu D, Flemington EK, Deininger P, Zhang K.

PLoS One. 2012;7(2):e31429. doi: 10.1371/journal.pone.0031429. Epub 2012 Feb 14.

20.

Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets.

Hausser J, Landthaler M, Jaskiewicz L, Gaidatzis D, Zavolan M.

Genome Res. 2009 Nov;19(11):2009-20. doi: 10.1101/gr.091181.109. Epub 2009 Sep 18.

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