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Items: 1 to 20 of 119

1.

Evidence of pervasive biologically functional secondary structures within the genomes of eukaryotic single-stranded DNA viruses.

Muhire BM, Golden M, Murrell B, Lefeuvre P, Lett JM, Gray A, Poon AY, Ngandu NK, Semegni Y, Tanov EP, Monjane AL, Harkins GW, Varsani A, Shepherd DN, Martin DP.

J Virol. 2014 Feb;88(4):1972-89. doi: 10.1128/JVI.03031-13. Epub 2013 Nov 27.

2.

Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes.

Krupovic M, Forterre P.

Ann N Y Acad Sci. 2015 Apr;1341:41-53. doi: 10.1111/nyas.12675. Epub 2015 Feb 11. Review.

PMID:
25675979
3.

Widespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomes.

Liu H, Fu Y, Li B, Yu X, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D.

BMC Evol Biol. 2011 Sep 26;11:276. doi: 10.1186/1471-2148-11-276.

4.

Recombination in eukaryotic single stranded DNA viruses.

Martin DP, Biagini P, Lefeuvre P, Golden M, Roumagnac P, Varsani A.

Viruses. 2011 Sep;3(9):1699-738. doi: 10.3390/v3091699. Epub 2011 Sep 13. Review.

5.

Genome wide survey of microsatellites in ssDNA viruses infecting vertebrates.

Jain A, Mittal N, Sharma PC.

Gene. 2014 Dec 1;552(2):209-18. doi: 10.1016/j.gene.2014.09.032. Epub 2014 Sep 19.

PMID:
25241644
6.

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.

Roux S, Enault F, Bronner G, Vaulot D, Forterre P, Krupovic M.

Nat Commun. 2013;4:2700. doi: 10.1038/ncomms3700.

PMID:
24193254
7.

Widely conserved recombination patterns among single-stranded DNA viruses.

Lefeuvre P, Lett JM, Varsani A, Martin DP.

J Virol. 2009 Mar;83(6):2697-707. doi: 10.1128/JVI.02152-08. Epub 2008 Dec 30.

8.

High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage.

Ng TF, Marine R, Wang C, Simmonds P, Kapusinszky B, Bodhidatta L, Oderinde BS, Wommack KE, Delwart E.

J Virol. 2012 Nov;86(22):12161-75. doi: 10.1128/JVI.00869-12. Epub 2012 Aug 29.

10.

Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing.

Krupovic M, Zhi N, Li J, Hu G, Koonin EV, Wong S, Shevchenko S, Zhao K, Young NS.

Genome Biol Evol. 2015 Apr 2;7(4):993-1001. doi: 10.1093/gbe/evv034.

11.

New single-stranded DNA virus with a unique genomic structure that infects marine diatom Chaetoceros setoensis.

Tomaru Y, Toyoda K, Suzuki H, Nagumo T, Kimura K, Takao Y.

Sci Rep. 2013 Nov 26;3:3337. doi: 10.1038/srep03337.

12.

Previously unknown and highly divergent ssDNA viruses populate the oceans.

Labonté JM, Suttle CA.

ISME J. 2013 Nov;7(11):2169-77. doi: 10.1038/ismej.2013.110. Epub 2013 Jul 11.

13.

Mechanisms for RNA capture by ssDNA viruses: grand theft RNA.

Stedman K.

J Mol Evol. 2013 Jun;76(6):359-64. doi: 10.1007/s00239-013-9569-9. Epub 2013 Jun 20. Review.

PMID:
23784142
15.

Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome.

Mochizuki T, Krupovic M, Pehau-Arnaudet G, Sako Y, Forterre P, Prangishvili D.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13386-91. doi: 10.1073/pnas.1203668109. Epub 2012 Jul 23.

16.

Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs.

Pollom E, Dang KK, Potter EL, Gorelick RJ, Burch CL, Weeks KM, Swanstrom R.

PLoS Pathog. 2013;9(4):e1003294. doi: 10.1371/journal.ppat.1003294. Epub 2013 Apr 4.

17.

Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus.

Monjane AL, Pande D, Lakay F, Shepherd DN, van der Walt E, Lefeuvre P, Lett JM, Varsani A, Rybicki EP, Martin DP.

BMC Evol Biol. 2012 Dec 27;12:252. doi: 10.1186/1471-2148-12-252.

18.

Evolutionary history of ssDNA bacilladnaviruses features horizontal acquisition of the capsid gene from ssRNA nodaviruses.

Kazlauskas D, Dayaram A, Kraberger S, Goldstien S, Varsani A, Krupovic M.

Virology. 2017 Apr;504:114-121. doi: 10.1016/j.virol.2017.02.001. Epub 2017 Feb 10.

PMID:
28189969
19.

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics.

Rosario K, Duffy S, Breitbart M.

Arch Virol. 2012 Oct;157(10):1851-71. Epub 2012 Jul 4. Review. Erratum in: Arch Virol. 2012 Oct;157(10):1873-4.

PMID:
22760663
20.

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks.

Martin DP, Lefeuvre P, Varsani A, Hoareau M, Semegni JY, Dijoux B, Vincent C, Reynaud B, Lett JM.

PLoS Pathog. 2011 Sep;7(9):e1002203. doi: 10.1371/journal.ppat.1002203. Epub 2011 Sep 15.

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