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Cigarette smoke induces distinct histone modifications in lung cells: implications for the pathogenesis of COPD and lung cancer.

Sundar IK, Nevid MZ, Friedman AE, Rahman I.

J Proteome Res. 2014 Feb 7;13(2):982-96. doi: 10.1021/pr400998n. Epub 2013 Dec 13.


Oxidative stress and chromatin remodeling in chronic obstructive pulmonary disease and smoking-related diseases.

Sundar IK, Yao H, Rahman I.

Antioxid Redox Signal. 2013 May 20;18(15):1956-71. doi: 10.1089/ars.2012.4863. Epub 2012 Nov 6. Review.


Gene expression profiling of epigenetic chromatin modification enzymes and histone marks by cigarette smoke: implications for COPD and lung cancer.

Sundar IK, Rahman I.

Am J Physiol Lung Cell Mol Physiol. 2016 Dec 1;311(6):L1245-L1258. doi: 10.1152/ajplung.00253.2016. Epub 2016 Oct 28.


Mitogen- and stress-activated kinase 1 (MSK1) regulates cigarette smoke-induced histone modifications on NF-κB-dependent genes.

Sundar IK, Chung S, Hwang JW, Lapek JD Jr, Bulger M, Friedman AE, Yao H, Davie JR, Rahman I.

PLoS One. 2012;7(2):e31378. doi: 10.1371/journal.pone.0031378. Epub 2012 Feb 1.


NF-κB inducing kinase, NIK mediates cigarette smoke/TNFα-induced histone acetylation and inflammation through differential activation of IKKs.

Chung S, Sundar IK, Hwang JW, Yull FE, Blackwell TS, Kinnula VL, Bulger M, Yao H, Rahman I.

PLoS One. 2011;6(8):e23488. doi: 10.1371/journal.pone.0023488. Epub 2011 Aug 24.


Acetylation of lysine 9 on histone H3 is associated with increased pro-inflammatory cytokine release in a cigarette smoke-induced rat model through HDAC1 depression.

Chen X, Guan XJ, Peng XH, Cui ZL, Luan CY, Guo XJ.

Inflamm Res. 2015 Jul;64(7):513-26. doi: 10.1007/s00011-015-0832-y. Epub 2015 Jun 2.


Targeted disruption of NF-{kappa}B1 (p50) augments cigarette smoke-induced lung inflammation and emphysema in mice: a critical role of p50 in chromatin remodeling.

Rajendrasozhan S, Chung S, Sundar IK, Yao H, Rahman I.

Am J Physiol Lung Cell Mol Physiol. 2010 Feb;298(2):L197-209. doi: 10.1152/ajplung.00265.2009. Epub 2009 Dec 4.


Curcumin modulates the effect of histone modification on the expression of chemokines by type II alveolar epithelial cells in a rat COPD model.

Gan L, Li C, Wang J, Guo X.

Int J Chron Obstruct Pulmon Dis. 2016 Nov 7;11:2765-2773. eCollection 2016.


IKK alpha causes chromatin modification on pro-inflammatory genes by cigarette smoke in mouse lung.

Yang SR, Valvo S, Yao H, Kode A, Rajendrasozhan S, Edirisinghe I, Caito S, Adenuga D, Henry R, Fromm G, Maggirwar S, Li JD, Bulger M, Rahman I.

Am J Respir Cell Mol Biol. 2008 Jun;38(6):689-98. doi: 10.1165/rcmb.2007-0379OC. Epub 2008 Jan 31.


Mass spectrometry analysis of the variants of histone H3 and H4 of soybean and their post-translational modifications.

Wu T, Yuan T, Tsai SN, Wang C, Sun SM, Lam HM, Ngai SM.

BMC Plant Biol. 2009 Jul 31;9:98. doi: 10.1186/1471-2229-9-98.


Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition.

Garcia BA, Busby SA, Shabanowitz J, Hunt DF, Mishra N.

J Proteome Res. 2005 Nov-Dec;4(6):2032-42.


Histone deacetylase 2 is phosphorylated, ubiquitinated, and degraded by cigarette smoke.

Adenuga D, Yao H, March TH, Seagrave J, Rahman I.

Am J Respir Cell Mol Biol. 2009 Apr;40(4):464-73. doi: 10.1165/rcmb.2008-0255OC. Epub 2008 Oct 16.


SILAC-based proteomic analysis to dissect the "histone modification signature" of human breast cancer cells.

Cuomo A, Moretti S, Minucci S, Bonaldi T.

Amino Acids. 2011 Jul;41(2):387-99. doi: 10.1007/s00726-010-0668-2. Epub 2010 Jul 9.


Comparative analysis of histone H3 and H4 post-translational modifications of esophageal squamous cell carcinoma with different invasive capabilities.

Zhang K, Li L, Zhu M, Wang G, Xie J, Zhao Y, Fan E, Xu L, Li E.

J Proteomics. 2015 Jan 1;112:180-9. doi: 10.1016/j.jprot.2014.09.004. Epub 2014 Sep 16.


Cigarette smoke-induced necroptosis and DAMP release trigger neutrophilic airway inflammation in mice.

Pouwels SD, Zijlstra GJ, van der Toorn M, Hesse L, Gras R, Ten Hacken NH, Krysko DV, Vandenabeele P, de Vries M, van Oosterhout AJ, Heijink IH, Nawijn MC.

Am J Physiol Lung Cell Mol Physiol. 2016 Feb 15;310(4):L377-86. doi: 10.1152/ajplung.00174.2015. Epub 2015 Dec 30.


Glutaredoxin 1 regulates cigarette smoke-mediated lung inflammation through differential modulation of I{kappa}B kinases in mice: impact on histone acetylation.

Chung S, Sundar IK, Yao H, Ho YS, Rahman I.

Am J Physiol Lung Cell Mol Physiol. 2010 Aug;299(2):L192-203. doi: 10.1152/ajplung.00426.2009. Epub 2010 May 14.


SIRT1 redresses the imbalance of tissue inhibitor of matrix metalloproteinase-1 and matrix metalloproteinase-9 in the development of mouse emphysema and human COPD.

Yao H, Hwang JW, Sundar IK, Friedman AE, McBurney MW, Guarente L, Gu W, Kinnula VL, Rahman I.

Am J Physiol Lung Cell Mol Physiol. 2013 Nov 1;305(9):L615-24. doi: 10.1152/ajplung.00249.2012. Epub 2013 Sep 13.


Identification of combinatorial patterns of post-translational modifications on individual histones in the mouse brain.

Tweedie-Cullen RY, Brunner AM, Grossmann J, Mohanna S, Sichau D, Nanni P, Panse C, Mansuy IM.

PLoS One. 2012;7(5):e36980. doi: 10.1371/journal.pone.0036980. Epub 2012 May 31.


Macrophage migration inhibitory factor is a novel determinant of cigarette smoke-induced lung damage.

Fallica J, Boyer L, Kim B, Serebreni L, Varela L, Hamdan O, Wang L, Simms T, Damarla M, Kolb TM, Bucala R, Mitzner W, Hassoun PM, Damico R.

Am J Respir Cell Mol Biol. 2014 Jul;51(1):94-103. doi: 10.1165/rcmb.2013-0371OC.


Identification of repressive and active epigenetic marks and nuclear bodies in Entamoeba histolytica.

Lozano-Amado D, Herrera-Solorio AM, Valdés J, Alemán-Lazarini L, Almaraz-Barrera Mde J, Luna-Rivera E, Vargas M, Hernández-Rivas R.

Parasit Vectors. 2016 Jan 14;9:19. doi: 10.1186/s13071-016-1298-7.

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