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Items: 1 to 20 of 138

1.

SNP-based analysis of genetic diversity in anther-derived rice by whole genome sequencing.

Jeong IS, Yoon UH, Lee GS, Ji HS, Lee HJ, Han CD, Hahn JH, An G, Kim TH.

Rice (N Y). 2013 Mar 14;6(1):6. doi: 10.1186/1939-8433-6-6.

2.

Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.

Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K.

Plant Cell Physiol. 2011 Feb;52(2):274-82. doi: 10.1093/pcp/pcr003. Epub 2011 Jan 21.

3.

A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.

Srivastava SK, Wolinski P, Pereira A.

PLoS One. 2014 Sep 19;9(9):e105335. doi: 10.1371/journal.pone.0105335. eCollection 2014.

4.

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M.

BMC Genomics. 2010 Apr 27;11:267. doi: 10.1186/1471-2164-11-267.

5.

Genome-wide DNA polymorphism in the indica rice varieties RGD-7S and Taifeng B as revealed by whole genome re-sequencing.

Fu CY, Liu WG, Liu DL, Li JH, Zhu MS, Liao YL, Liu ZR, Zeng XQ, Wang F.

Genome. 2016 Mar;59(3):197-207. doi: 10.1139/gen-2015-0101.

PMID:
26926666
6.

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.

Subbaiyan GK, Waters DL, Katiyar SK, Sadananda AR, Vaddadi S, Henry RJ.

Plant Biotechnol J. 2012 Aug;10(6):623-34. doi: 10.1111/j.1467-7652.2011.00676.x. Epub 2012 Jan 6.

7.

Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance.

Jain M, Moharana KC, Shankar R, Kumari R, Garg R.

Plant Biotechnol J. 2014 Feb;12(2):253-64. doi: 10.1111/pbi.12133. Epub 2013 Oct 30.

8.

Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.

Liu W, Ghouri F, Yu H, Li X, Yu S, Shahid MQ, Liu X.

PLoS One. 2017 Jul 11;12(7):e0180662. doi: 10.1371/journal.pone.0180662. eCollection 2017.

9.

SNP detection and prediction of variability between chicken lines using genome resequencing of DNA pools.

Marklund S, Carlborg O.

BMC Genomics. 2010 Nov 25;11:665. doi: 10.1186/1471-2164-11-665.

10.

Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity.

Hu Y, Mao B, Peng Y, Sun Y, Pan Y, Xia Y, Sheng X, Li Y, Tang L, Yuan L, Zhao B.

Mol Genet Genomics. 2014 Jun;289(3):303-15. doi: 10.1007/s00438-013-0807-z. Epub 2014 Jan 12.

PMID:
24414128
11.

Genome-wide SNP identification and characterization in two soybean cultivars with contrasting Mungbean Yellow Mosaic India Virus disease resistance traits.

Yadav CB, Bhareti P, Muthamilarasan M, Mukherjee M, Khan Y, Rathi P, Prasad M.

PLoS One. 2015 Apr 13;10(4):e0123897. doi: 10.1371/journal.pone.0123897. eCollection 2015.

12.

Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.

Arai-Kichise Y, Shiwa Y, Ebana K, Shibata-Hatta M, Yoshikawa H, Yano M, Wakasa K.

PLoS One. 2014 Jan 21;9(1):e86312. doi: 10.1371/journal.pone.0086312. eCollection 2014.

13.

Defining the genome structure of 'Tongil' rice, an important cultivar in the Korean "Green Revolution".

Kim B, Kim DG, Lee G, Seo J, Choi IY, Choi BS, Yang TJ, Kim KS, Lee J, Chin JH, Koh HJ.

Rice (N Y). 2014 Dec;7(1):22. doi: 10.1186/s12284-014-0022-5. Epub 2014 Sep 14.

14.

Genome-wide resequencing of KRICE_CORE reveals their potential for future breeding, as well as functional and evolutionary studies in the post-genomic era.

Kim TS, He Q, Kim KW, Yoon MY, Ra WH, Li FP, Tong W, Yu J, Oo WH, Choi B, Heo EB, Yun BK, Kwon SJ, Kwon SW, Cho YH, Lee CY, Park BS, Park YJ.

BMC Genomics. 2016 May 26;17:408. doi: 10.1186/s12864-016-2734-y.

15.

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events.

Causse M, Desplat N, Pascual L, Le Paslier MC, Sauvage C, Bauchet G, Bérard A, Bounon R, Tchoumakov M, Brunel D, Bouchet JP.

BMC Genomics. 2013 Nov 14;14:791. doi: 10.1186/1471-2164-14-791.

16.
17.

HapRice, an SNP haplotype database and a web tool for rice.

Yonemaru J, Ebana K, Yano M.

Plant Cell Physiol. 2014 Jan;55(1):e9. doi: 10.1093/pcp/pct188. Epub 2013 Dec 13.

PMID:
24334415
18.

Tissue culture-induced heritable genomic variation in rice, and their phenotypic implications.

Zhang D, Wang Z, Wang N, Gao Y, Liu Y, Wu Y, Bai Y, Zhang Z, Lin X, Dong Y, Ou X, Xu C, Liu B.

PLoS One. 2014 May 7;9(5):e96879. doi: 10.1371/journal.pone.0096879. eCollection 2014.

19.

Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G.

BMC Genomics. 2010 Nov 24;11:656. doi: 10.1186/1471-2164-11-656.

20.

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.

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