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Items: 1 to 20 of 100

1.

Construction of microRNA functional families by a mixture model of position weight matrices.

Rhee JK, Shin SY, Zhang BT.

PeerJ. 2013 Oct 31;1:e199. doi: 10.7717/peerj.199. eCollection 2013.

2.

Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila.

Gu J, Fu H, Zhang X, Li Y.

BMC Bioinformatics. 2007 Nov 8;8:432.

3.

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals.

Takane K, Fujishima K, Watanabe Y, Sato A, Saito N, Tomita M, Kanai A.

BMC Genomics. 2010 Feb 9;11:101. doi: 10.1186/1471-2164-11-101.

4.

MicroRNA targets in Drosophila.

Enright AJ, John B, Gaul U, Tuschl T, Sander C, Marks DS.

Genome Biol. 2003;5(1):R1. Epub 2003 Dec 12.

5.

A wide repertoire of miRNA binding sites: prediction and functional implications.

Elefant N, Altuvia Y, Margalit H.

Bioinformatics. 2011 Nov 15;27(22):3093-101. doi: 10.1093/bioinformatics/btr534. Epub 2011 Sep 27.

PMID:
21953484
6.

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.

7.

A bioinformatics-based update on microRNAs and their targets in rainbow trout (Oncorhynchus mykiss).

Yang L, He S.

Gene. 2014 Jan 1;533(1):261-9. doi: 10.1016/j.gene.2013.09.060. Epub 2013 Sep 21.

PMID:
24064144
8.

MicroRNAs and their putative targets in Brassica napus seed maturation.

Huang D, Koh C, Feurtado JA, Tsang EW, Cutler AJ.

BMC Genomics. 2013 Feb 28;14:140. doi: 10.1186/1471-2164-14-140.

9.

Genome wide identification of chilling responsive microRNAs in Prunus persica.

Barakat A, Sriram A, Park J, Zhebentyayeva T, Main D, Abbott A.

BMC Genomics. 2012 Sep 15;13:481. doi: 10.1186/1471-2164-13-481.

10.

A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.).

Colaiacovo M, Subacchi A, Bagnaresi P, Lamontanara A, Cattivelli L, Faccioli P.

BMC Genomics. 2010 Oct 22;11:595. doi: 10.1186/1471-2164-11-595.

11.

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.

12.

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata).

Song C, Wang C, Zhang C, Korir NK, Yu H, Ma Z, Fang J.

BMC Genomics. 2010 Jul 13;11:431. doi: 10.1186/1471-2164-11-431.

13.

Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.).

Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H.

BMC Genomics. 2014 Apr 16;15:289. doi: 10.1186/1471-2164-15-289.

14.
15.

Discovering dysfunction of multiple microRNAs cooperation in disease by a conserved microRNA co-expression network.

Xiao Y, Xu C, Guan J, Ping Y, Fan H, Li Y, Zhao H, Li X.

PLoS One. 2012;7(2):e32201. doi: 10.1371/journal.pone.0032201. Epub 2012 Feb 22.

16.

Inference of miRNA targets using evolutionary conservation and pathway analysis.

Gaidatzis D, van Nimwegen E, Hausser J, Zavolan M.

BMC Bioinformatics. 2007 Mar 1;8:69. Erratum in: BMC Bioinformatics. 2007 Jul 12;8(1):248.

17.

In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus.

Catalano D, Pignone D, Sonnante G, Finetti-Sialer MM.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S12. doi: 10.1186/1471-2105-13-S4-S12.

18.
19.

Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach.

Andreassen R, Worren MM, Høyheim B.

BMC Genomics. 2013 Jul 17;14:482. doi: 10.1186/1471-2164-14-482.

20.

Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs.

Lai EC, Tam B, Rubin GM.

Genes Dev. 2005 May 1;19(9):1067-80. Epub 2005 Apr 15.

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