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Items: 1 to 20 of 83

1.

A New Path Based Hybrid Measure for Gene Ontology Similarity.

Bandyopadhyay S, Mallick K.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Nov 15. [Epub ahead of print]

PMID:
24249658
2.

A New Path Based Hybrid Measure for Gene Ontology Similarity.

Bandyopadhyay S, Mallick K.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jan-Feb;11(1):116-27. doi: 10.1109/TCBB.2013.149.

PMID:
26355512
3.

A relation based measure of semantic similarity for Gene Ontology annotations.

Sheehan B, Quigley A, Gaudin B, Dobson S.

BMC Bioinformatics. 2008 Nov 4;9:468. doi: 10.1186/1471-2105-9-468.

4.

A shortest-path graph kernel for estimating gene product semantic similarity.

Alvarez MA, Qi X, Yan C.

J Biomed Semantics. 2011 Jul 29;2:3. doi: 10.1186/2041-1480-2-3.

5.

IntelliGO: a new vector-based semantic similarity measure including annotation origin.

Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.

BMC Bioinformatics. 2010 Dec 1;11:588. doi: 10.1186/1471-2105-11-588.

6.

Assessment of semantic similarity between proteins using information content and topological properties of the Gene Ontology graph.

Dutta P, Basu S, Kundu M.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar 31. doi: 10.1109/TCBB.2017.2689762. [Epub ahead of print]

PMID:
28371781
7.

Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty.

Yang H, Nepusz T, Paccanaro A.

Bioinformatics. 2012 May 15;28(10):1383-9. doi: 10.1093/bioinformatics/bts129. Epub 2012 Apr 19.

PMID:
22522134
8.

Characterisation of semantic similarity on gene ontology based on a shortest path approach.

Shen Y, Zhang S, Wong HS, Zhang L.

Int J Data Min Bioinform. 2014;10(1):33-48.

PMID:
25757253
9.

A graph-based semantic similarity measure for the gene ontology.

Alvarez MA, Yan C.

J Bioinform Comput Biol. 2011 Dec;9(6):681-95.

PMID:
22084008
10.

Exploring information from the topology beneath the Gene Ontology terms to improve semantic similarity measures.

Zhang SB, Lai JH.

Gene. 2016 Jul 15;586(1):148-57. doi: 10.1016/j.gene.2016.04.024. Epub 2016 Apr 12.

PMID:
27080954
11.

Semantic similarity measurement between gene ontology terms based on exclusively inherited shared information.

Zhang SB, Lai JH.

Gene. 2015 Mar 1;558(1):108-17. doi: 10.1016/j.gene.2014.12.062. Epub 2014 Dec 28.

PMID:
25550042
12.

Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.

Song X, Li L, Srimani PK, Yu PS, Wang JZ.

IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):468-76. doi: 10.1109/TCBB.2013.176.

PMID:
26356015
13.

A weighted multipath measurement based on gene ontology for estimating gene products similarity.

Liu L, Dai X, Wang H, Song W, Lu J.

J Comput Biol. 2014 Dec;21(12):964-74. doi: 10.1089/cmb.2014.0143.

14.

A new method to measure the semantic similarity of GO terms.

Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF.

Bioinformatics. 2007 May 15;23(10):1274-81. Epub 2007 Mar 7.

PMID:
17344234
15.

Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses.

Bien SJ, Park CH, Shim HJ, Yang W, Kim J, Kim JH.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):765-74. doi: 10.1136/amiajnl-2011-000659. Epub 2012 Feb 28.

16.

TopoICSim: a new semantic similarity measure based on gene ontology.

Ehsani R, Drabløs F.

BMC Bioinformatics. 2016 Jul 29;17(1):296. doi: 10.1186/s12859-016-1160-0.

17.

An improved method for functional similarity analysis of genes based on Gene Ontology.

Tian Z, Wang C, Guo M, Liu X, Teng Z.

BMC Syst Biol. 2016 Dec 23;10(Suppl 4):119. doi: 10.1186/s12918-016-0359-z.

18.

Measure the Semantic Similarity of GO terms Using Aggregate Information Content.

Song X, Li L, Srimani PK, Yu PS, Wang JZ.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Dec 11. [Epub ahead of print]

PMID:
24344093
19.

Protein-protein interaction inference based on semantic similarity of Gene Ontology terms.

Zhang SB, Tang QR.

J Theor Biol. 2016 Jul 21;401:30-7. doi: 10.1016/j.jtbi.2016.04.020. Epub 2016 Apr 23.

PMID:
27117309
20.

Improving the measurement of semantic similarity between gene ontology terms and gene products: insights from an edge- and IC-based hybrid method.

Wu X, Pang E, Lin K, Pei ZM.

PLoS One. 2013 May 31;8(5):e66745. doi: 10.1371/journal.pone.0066745. Print 2013.

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