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Items: 1 to 20 of 83

1.

RNA-sequencing from single nuclei.

Grindberg RV, Yee-Greenbaum JL, McConnell MJ, Novotny M, O'Shaughnessy AL, Lambert GM, Ara├║zo-Bravo MJ, Lee J, Fishman M, Robbins GE, Lin X, Venepally P, Badger JH, Galbraith DW, Gage FH, Lasken RS.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19802-7. doi: 10.1073/pnas.1319700110. Epub 2013 Nov 18.

2.

Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method.

Tan L, Xiong L, Xu W, Wu F, Huang N, Xu Y, Kong L, Zheng L, Schwartz L, Shi Y, Shi YG.

Nucleic Acids Res. 2013 Apr;41(7):e84. doi: 10.1093/nar/gkt091. Epub 2013 Feb 13.

3.

Exploring the transcriptome space of a recombinant BHK cell line through next generation sequencing.

Johnson KC, Yongky A, Vishwanathan N, Jacob NM, Jayapal KP, Goudar CT, Karypis G, Hu WS.

Biotechnol Bioeng. 2014 Apr;111(4):770-81. doi: 10.1002/bit.25135. Epub 2013 Nov 19.

PMID:
24249083
4.

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.

Klein AM, Mazutis L, Akartuna I, Tallapragada N, Veres A, Li V, Peshkin L, Weitz DA, Kirschner MW.

Cell. 2015 May 21;161(5):1187-1201. doi: 10.1016/j.cell.2015.04.044.

5.

Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.

Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J.

Genome Biol. 2015 Jun 9;16:122. doi: 10.1186/s13059-015-0683-4.

6.

Identification of a novel intronic enhancer responsible for the transcriptional regulation of musashi1 in neural stem/progenitor cells.

Kawase S, Imai T, Miyauchi-Hara C, Yaguchi K, Nishimoto Y, Fukami S, Matsuzaki Y, Miyawaki A, Itohara S, Okano H.

Mol Brain. 2011 Apr 13;4:14. doi: 10.1186/1756-6606-4-14.

7.

Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM.

Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.

PMID:
18516046
9.

Transcriptome analysis of rosette and folding leaves in Chinese cabbage using high-throughput RNA sequencing.

Wang F, Li L, Li H, Liu L, Zhang Y, Gao J, Wang X.

Genomics. 2012 May;99(5):299-307. doi: 10.1016/j.ygeno.2012.02.005. Epub 2012 Feb 23.

10.

RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene.

van Delft J, Gaj S, Lienhard M, Albrecht MW, Kirpiy A, Brauers K, Claessen S, Lizarraga D, Lehrach H, Herwig R, Kleinjans J.

Toxicol Sci. 2012 Dec;130(2):427-39. doi: 10.1093/toxsci/kfs250. Epub 2012 Aug 13.

PMID:
22889811
11.

Patterns of developmental expression of the RNA editing enzyme rADAR2.

Paupard M-C, O'Connell MA, Gerber AP, Zukin RS.

Neuroscience. 2000;95(3):869-79.

PMID:
10670454
12.

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.

13.

A strand-specific library preparation protocol for RNA sequencing.

Borodina T, Adjaye J, Sultan M.

Methods Enzymol. 2011;500:79-98. doi: 10.1016/B978-0-12-385118-5.00005-0.

PMID:
21943893
14.

Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing.

Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, Hutchison SK, Harkins TT, Thierry-Mieg D, Thierry-Mieg J, Jensen RV.

BMC Genomics. 2009 Jun 12;10:264. doi: 10.1186/1471-2164-10-264.

15.

Neural crest and mesoderm lineage-dependent gene expression in orofacial development.

Bhattacherjee V, Mukhopadhyay P, Singh S, Johnson C, Philipose JT, Warner CP, Greene RM, Pisano MM.

Differentiation. 2007 Jun;75(5):463-77. Epub 2007 Feb 5.

PMID:
17286603
16.

High-throughput single nucleotide variant discovery in E14 mouse embryonic stem cells provides a new reference genome assembly.

Incarnato D, Krepelova A, Neri F.

Genomics. 2014 Aug;104(2):121-7. doi: 10.1016/j.ygeno.2014.06.007. Epub 2014 Jul 5.

PMID:
25004115
17.

Isolation of nuclei for use in genome-wide DNase hypersensitivity assays to probe chromatin structure.

Ling G, Waxman DJ.

Methods Mol Biol. 2013;977:13-9. doi: 10.1007/978-1-62703-284-1_2.

18.

Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.

Ha KC, Lalonde E, Li L, Cavallone L, Natrajan R, Lambros MB, Mitsopoulos C, Hakas J, Kozarewa I, Fenwick K, Lord CJ, Ashworth A, Vincent-Salomon A, Basik M, Reis-Filho JS, Majewski J, Foulkes WD.

BMC Med Genomics. 2011 Oct 27;4:75. doi: 10.1186/1755-8794-4-75.

19.

Characterizing the mouse ES cell transcriptome with Illumina sequencing.

Rosenkranz R, Borodina T, Lehrach H, Himmelbauer H.

Genomics. 2008 Oct;92(4):187-94. doi: 10.1016/j.ygeno.2008.05.011. Epub 2008 Aug 3.

20.

[Use of the real-time RT-PCR method for investigation of small stable RNA expression level in human epidermoid carcinoma cells A431].

Nikitina TV, Nazarova NIu, Tishchenko LI, Tuohimaa P, Sedova VM.

Tsitologiia. 2003;45(4):392-402. Russian.

PMID:
14520871

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