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Items: 1 to 20 of 108


The Ontology of Clinical Research (OCRe): an informatics foundation for the science of clinical research.

Sim I, Tu SW, Carini S, Lehmann HP, Pollock BH, Peleg M, Wittkowski KM.

J Biomed Inform. 2014 Dec;52:78-91. doi: 10.1016/j.jbi.2013.11.002. Epub 2013 Nov 13.


Deriving an abstraction network to support quality assurance in OCRe.

Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J.

AMIA Annu Symp Proc. 2012;2012:681-9. Epub 2012 Nov 3.


Evaluation of research in biomedical ontologies.

Hoehndorf R, Dumontier M, Gkoutos GV.

Brief Bioinform. 2013 Nov;14(6):696-712. doi: 10.1093/bib/bbs053. Epub 2012 Sep 8.


Toward an ontology-based framework for clinical research databases.

Kong YM, Dahlke C, Xiang Q, Qian Y, Karp D, Scheuermann RH.

J Biomed Inform. 2011 Feb;44(1):48-58. doi: 10.1016/j.jbi.2010.05.001. Epub 2010 May 10.


Anatomical reasoning in the informatics age: Principles, ontologies, and agendas.

Trelease RB.

Anat Rec B New Anat. 2006 Mar;289(2):72-84. Review.


Ontology-based federated data access to human studies information.

Sim I, Carini S, Tu SW, Detwiler LT, Brinkley J, Mollah SA, Burke K, Lehmann HP, Chakraborty S, Wittkowski KM, Pollock BH, Johnson TM, Huser V; Human Studies Database Project..

AMIA Annu Symp Proc. 2012;2012:856-65. Epub 2012 Nov 3.


BiOSS: A system for biomedical ontology selection.

Martínez-Romero M, Vázquez-Naya JM, Pereira J, Pazos A.

Comput Methods Programs Biomed. 2014 Apr;114(1):125-40. doi: 10.1016/j.cmpb.2014.01.020. Epub 2014 Feb 6.


NanoParticle Ontology for cancer nanotechnology research.

Thomas DG, Pappu RV, Baker NA.

J Biomed Inform. 2011 Feb;44(1):59-74. doi: 10.1016/j.jbi.2010.03.001. Epub 2010 Mar 6.


The human studies database project: federating human studies design data using the ontology of clinical research.

Sim I, Carini S, Tu S, Wynden R, Pollock BH, Mollah SA, Gabriel D, Hagler HK, Scheuermann RH, Lehmann HP, Wittkowski KM, Nahm M, Bakken S.

AMIA Jt Summits Transl Sci Proc. 2010 Mar 1;2010:51-5.


[Concepts of ontology-based neuroinformatics and their relations].

Li Y, Yu JF, Yin L, Cui GZ.

Beijing Da Xue Xue Bao. 2009 Apr 18;41(2):230-4. Chinese.


Cognitive and learning sciences in biomedical and health instructional design: A review with lessons for biomedical informatics education.

Patel VL, Yoskowitz NA, Arocha JF, Shortliffe EH.

J Biomed Inform. 2009 Feb;42(1):176-97. doi: 10.1016/j.jbi.2008.12.002. Epub 2008 Dec 24. Review.


The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research.

Tenenbaum JD, Whetzel PL, Anderson K, Borromeo CD, Dinov ID, Gabriel D, Kirschner B, Mirel B, Morris T, Noy N, Nyulas C, Rubenson D, Saxman PR, Singh H, Whelan N, Wright Z, Athey BD, Becich MJ, Ginsburg GS, Musen MA, Smith KA, Tarantal AF, Rubin DL, Lyster P.

J Biomed Inform. 2011 Feb;44(1):137-45. doi: 10.1016/j.jbi.2010.10.003. Epub 2010 Oct 16.


Ontology-Oriented Programming for Biomedical Informatics.

Lamy JB.

Stud Health Technol Inform. 2016;221:64-8.


Science and practice: a case for medical informatics as a local science of design.

Patel VL, Kaufman DR.

J Am Med Inform Assoc. 1998 Nov-Dec;5(6):489-92.


Computational framework to support integration of biomolecular and clinical data within a translational approach.

Miyoshi NS, Pinheiro DG, Silva WA Jr, Felipe JC.

BMC Bioinformatics. 2013 Jun 6;14:180. doi: 10.1186/1471-2105-14-180.


Desiderata for domain reference ontologies in biomedicine.

Burgun A.

J Biomed Inform. 2006 Jun;39(3):307-13. Epub 2005 Oct 17.


Beyond the data deluge: data integration and bio-ontologies.

Blake JA, Bult CJ.

J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.


Applications of ontology design patterns in biomedical ontologies.

Mortensen JM, Horridge M, Musen MA, Noy NF.

AMIA Annu Symp Proc. 2012;2012:643-52. Epub 2012 Nov 3.


Medical informatics: searching for underlying components.

Musen MA.

Methods Inf Med. 2002;41(1):12-9.


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