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Items: 1 to 20 of 101

1.

Qualitative computational bioanalytics: assembly of viral channel-forming peptides around mono and divalent ions.

Li LH, Hsu HJ, Fischer WB.

Biochem Biophys Res Commun. 2013 Dec 6;442(1-2):85-91. doi: 10.1016/j.bbrc.2013.11.017. Epub 2013 Nov 12.

PMID:
24239548
2.

Assembling viral channel forming proteins: Vpu from HIV-1.

Li LH, Hsu HJ, Fischer WB.

Biopolymers. 2013 Aug;99(8):517-29. doi: 10.1002/bip.22210.

PMID:
23712488
3.

Bundles consisting of extended transmembrane segments of Vpu from HIV-1: computer simulations and conductance measurements.

Cordes FS, Tustian AD, Sansom MS, Watts A, Fischer WB.

Biochemistry. 2002 Jun 11;41(23):7359-65.

PMID:
12044168
4.

Ion channels formed by HIV-1 Vpu: a modelling and simulation study.

Grice AL, Kerr ID, Sansom MS.

FEBS Lett. 1997 Apr 1;405(3):299-304.

5.
6.

Structure based computational assessment of channel properties of assembled ORF-8a from SARS-CoV.

Hsu HJ, Lin MH, Schindler C, Fischer WB.

Proteins. 2015 Feb;83(2):300-8. doi: 10.1002/prot.24721. Epub 2014 Dec 19.

PMID:
25394339
7.

Patch formation of a viral channel forming protein within a lipid membrane--Vpu of HIV-1.

Lin MH, Chen CP, Fischer WB.

Mol Biosyst. 2016 Apr;12(4):1118-27. doi: 10.1039/c5mb00798d. Epub 2016 Feb 22.

PMID:
26899411
8.

Reconstructing potentials of mean force from short steered molecular dynamics simulations of Vpu from HIV-1.

Patargias G, Martay H, Fischer WB.

J Biomol Struct Dyn. 2009 Aug;27(1):1-12.

PMID:
19492858
9.

Simulation of the HIV-1 Vpu transmembrane domain as a pentameric bundle.

Moore PB, Zhong Q, Husslein T, Klein ML.

FEBS Lett. 1998 Jul 17;431(2):143-8.

10.

Biophysical characterization of Vpu from HIV-1 suggests a channel-pore dualism.

Mehnert T, Routh A, Judge PJ, Lam YH, Fischer D, Watts A, Fischer WB.

Proteins. 2008 Mar;70(4):1488-97.

PMID:
17910056
11.

Interaction of amiloride and one of its derivatives with Vpu from HIV-1: a molecular dynamics simulation.

Lemaitre V, Ali R, Kim CG, Watts A, Fischer WB.

FEBS Lett. 2004 Apr 9;563(1-3):75-81.

12.

Solution structure and orientation of the transmembrane anchor domain of the HIV-1-encoded virus protein U by high-resolution and solid-state NMR spectroscopy.

Wray V, Kinder R, Federau T, Henklein P, Bechinger B, Schubert U.

Biochemistry. 1999 Apr 20;38(16):5272-82.

PMID:
10213635
14.

Towards a mechanism of function of the viral ion channel Vpu from HIV-1.

Mehnert T, Lam YH, Judge PJ, Routh A, Fischer D, Watts A, Fischer WB.

J Biomol Struct Dyn. 2007 Jun;24(6):589-96.

PMID:
17508781
16.

Identification of an ion channel activity of the Vpu transmembrane domain and its involvement in the regulation of virus release from HIV-1-infected cells.

Schubert U, Ferrer-Montiel AV, Oblatt-Montal M, Henklein P, Strebel K, Montal M.

FEBS Lett. 1996 Nov 25;398(1):12-8.

17.

Three-dimensional structure of the channel-forming trans-membrane domain of virus protein "u" (Vpu) from HIV-1.

Park SH, Mrse AA, Nevzorov AA, Mesleh MF, Oblatt-Montal M, Montal M, Opella SJ.

J Mol Biol. 2003 Oct 17;333(2):409-24.

PMID:
14529626
18.

The structure of the HIV-1 Vpu ion channel: modelling and simulation studies.

Cordes FS, Kukol A, Forrest LR, Arkin IT, Sansom MS, Fischer WB.

Biochim Biophys Acta. 2001 Jun 6;1512(2):291-8.

19.

Molecular dynamics simulations reveal the HIV-1 Vpu transmembrane protein to form stable pentamers.

Padhi S, Khan N, Jameel S, Priyakumar UD.

PLoS One. 2013 Nov 6;8(11):e79779. doi: 10.1371/journal.pone.0079779. eCollection 2013.

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