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The transition from primary siRNAs to amplified secondary siRNAs that regulate chalcone synthase during development of Glycine max seed coats.

Cho YB, Jones SI, Vodkin L.

PLoS One. 2013 Oct 21;8(10):e76954. doi: 10.1371/journal.pone.0076954. eCollection 2013.


Endogenous, tissue-specific short interfering RNAs silence the chalcone synthase gene family in glycine max seed coats.

Tuteja JH, Zabala G, Varala K, Hudson M, Vodkin LO.

Plant Cell. 2009 Oct;21(10):3063-77. doi: 10.1105/tpc.109.069856. Epub 2009 Oct 9. Erratum in: Plant Cell. 2010 May;22(5):1647.


Molecular mechanism of seed coat discoloration induced by low temperature in yellow soybean.

Kasai A, Ohnishi S, Yamazaki H, Funatsuki H, Kurauchi T, Matsumoto T, Yumoto S, Senda M.

Plant Cell Physiol. 2009 Jun;50(6):1090-8. doi: 10.1093/pcp/pcp061. Epub 2009 Apr 23.


Endogenous RNA interference of chalcone synthase genes in soybean: formation of double-stranded RNA of GmIRCHS transcripts and structure of the 5' and 3' ends of short interfering RNAs.

Kurauchi T, Kasai A, Tougou M, Senda M.

J Plant Physiol. 2011 Jul 15;168(11):1264-70. doi: 10.1016/j.jplph.2011.01.003. Epub 2011 Feb 3.


Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.


Patterning of virus-infected Glycine max seed coat is associated with suppression of endogenous silencing of chalcone synthase genes.

Senda M, Masuta C, Ohnishi S, Goto K, Kasai A, Sano T, Hong JS, MacFarlane S.

Plant Cell. 2004 Apr;16(4):807-18. Epub 2004 Mar 22.


Transcriptome analysis reveals a critical role of CHS7 and CHS8 genes for isoflavonoid synthesis in soybean seeds.

Dhaubhadel S, Gijzen M, Moy P, Farhangkhoee M.

Plant Physiol. 2007 Jan;143(1):326-38. Epub 2006 Nov 10.


Differential expression of CHS7 and CHS8 genes in soybean.

Yi J, Derynck MR, Chen L, Dhaubhadel S.

Planta. 2010 Feb;231(3):741-53. doi: 10.1007/s00425-009-1079-z. Epub 2009 Dec 15.


A transgenic, visual screenable marker for soybean seeds.

Kanizay L, Jacobs T, Hancock CN.

Transgenic Res. 2016 Apr;25(2):187-93. doi: 10.1007/s11248-015-9922-4. Epub 2015 Dec 10.


Seed coat pigmentation in transgenic soybean expressing the silencing suppressor 2b gene of Cucumber mosaic virus.

Takagi K, Nishizawa K, Hirose A, Kurauchi T, Senda M, Masuta C, Ishimoto M.

Plant Cell Rep. 2013 Dec;32(12):1903-12.


Molecular linkage mapping and phylogeny of the chalcone synthase multigene family in soybean.

Matsumura H, Watanabe S, Harada K, Senda M, Akada S, Kawasaki S, Dubouzet EG, Minaka N, Takahashi R.

Theor Appl Genet. 2005 May;110(7):1203-9. Epub 2005 Mar 25.


Tandemly arranged chalcone synthase A genes contribute to the spatially regulated expression of siRNA and the natural bicolor floral phenotype in Petunia hybrida.

Morita Y, Saito R, Ban Y, Tanikawa N, Kuchitsu K, Ando T, Yoshikawa M, Habu Y, Ozeki Y, Nakayama M.

Plant J. 2012 Jun;70(5):739-49. doi: 10.1111/j.1365-313X.2012.04908.x. Epub 2012 Mar 30.


Sequence divergence at chalcone synthase gene in pigmented seed coat soybean mutants of the Inhibitor locus.

Senda M, Kasai A, Yumoto S, Akada S, Ishikawa R, Harada T, Niizeki M.

Genes Genet Syst. 2002 Oct;77(5):341-50.


Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.


Features of a 103-kb gene-rich region in soybean include an inverted perfect repeat cluster of CHS genes comprising the I locus.

Clough SJ, Tuteja JH, Li M, Marek LF, Shoemaker RC, Vodkin LO.

Genome. 2004 Oct;47(5):819-31.


Functional analysis of soybean genes involved in flavonoid biosynthesis by virus-induced gene silencing.

Nagamatsu A, Masuta C, Senda M, Matsuura H, Kasai A, Hong JS, Kitamura K, Abe J, Kanazawa A.

Plant Biotechnol J. 2007 Nov;5(6):778-90. Epub 2007 Aug 31. Erratum in: Plant Biotechnol J. 2008 Jan;6(1):103.

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