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Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists.

Chow CE, Kim DY, Sachdeva R, Caron DA, Fuhrman JA.

ISME J. 2014 Apr;8(4):816-29. doi: 10.1038/ismej.2013.199. Epub 2013 Nov 7.


Short-term observations of marine bacterial and viral communities: patterns, connections and resilience.

Needham DM, Chow CE, Cram JA, Sachdeva R, Parada A, Fuhrman JA.

ISME J. 2013 Jul;7(7):1274-85. doi: 10.1038/ismej.2013.19. Epub 2013 Feb 28.


Impact of protists on the activity and structure of the bacterial community in a rice field soil.

Murase J, Noll M, Frenzel P.

Appl Environ Microbiol. 2006 Aug;72(8):5436-44.


Seasonality and monthly dynamics of marine myovirus communities.

Chow CE, Fuhrman JA.

Environ Microbiol. 2012 Aug;14(8):2171-83. doi: 10.1111/j.1462-2920.2012.02744.x. Epub 2012 Apr 17.


Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.

Chow CE, Sachdeva R, Cram JA, Steele JA, Needham DM, Patel A, Parada AE, Fuhrman JA.

ISME J. 2013 Dec;7(12):2259-73. doi: 10.1038/ismej.2013.122. Epub 2013 Jul 18.


Marine bacterial, archaeal and protistan association networks reveal ecological linkages.

Steele JA, Countway PD, Xia L, Vigil PD, Beman JM, Kim DY, Chow CE, Sachdeva R, Jones AC, Schwalbach MS, Rose JM, Hewson I, Patel A, Sun F, Caron DA, Fuhrman JA.

ISME J. 2011 Sep;5(9):1414-25. doi: 10.1038/ismej.2011.24. Epub 2011 Mar 24.


Seasonality and disturbance: annual pattern and response of the bacterial and microbial eukaryotic assemblages in a freshwater ecosystem.

Jones AC, Liao TS, Najar FZ, Roe BA, Hambright KD, Caron DA.

Environ Microbiol. 2013 Sep;15(9):2557-72. doi: 10.1111/1462-2920.12151. Epub 2013 Jun 10.


Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.

Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A.

ISME J. 2012 Sep;6(9):1665-76. doi: 10.1038/ismej.2012.26. Epub 2012 Mar 29.


Defining seasonal marine microbial community dynamics.

Gilbert JA, Steele JA, Caporaso JG, Steinbrück L, Reeder J, Temperton B, Huse S, McHardy AC, Knight R, Joint I, Somerfield P, Fuhrman JA, Field D.

ISME J. 2012 Feb;6(2):298-308. doi: 10.1038/ismej.2011.107. Epub 2011 Aug 18.


Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes.

Berdjeb L, Pollet T, Domaizon I, Jacquet S.

BMC Microbiol. 2011 Apr 29;11:88. doi: 10.1186/1471-2180-11-88.


Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir.

Simek K, Pernthaler J, Weinbauer MG, Hornák K, Dolan JR, Nedoma J, Masín M, Amann R.

Appl Environ Microbiol. 2001 Jun;67(6):2723-33.


Links between viral and prokaryotic communities throughout the water column in the (sub)tropical Atlantic Ocean.

De Corte D, Sintes E, Winter C, Yokokawa T, Reinthaler T, Herndl GJ.

ISME J. 2010 Nov;4(11):1431-42. doi: 10.1038/ismej.2010.65. Epub 2010 May 20.


An all-taxon microbial inventory of the Moorea coral reef ecosystem.

McCliment EA, Nelson CE, Carlson CA, Alldredge AL, Witting J, Amaral-Zettler LA.

ISME J. 2012 Feb;6(2):309-19. doi: 10.1038/ismej.2011.108. Epub 2011 Sep 8.


Monthly to interannual variability of microbial eukaryote assemblages at four depths in the eastern North Pacific.

Kim DY, Countway PD, Jones AC, Schnetzer A, Yamashita W, Tung C, Caron DA.

ISME J. 2014 Mar;8(3):515-30. doi: 10.1038/ismej.2013.173. Epub 2013 Oct 31.


Protistan diversity estimates based on 18S rDNA from seawater incubations in the Western North Atlantic.

Countway PD, Gast RJ, Savai P, Caron DA.

J Eukaryot Microbiol. 2005 Mar-Apr;52(2):95-106.


Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria.

Jürgens K, Matz C.

Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):413-34. Review.


First investigation of the microbiology of the deepest layer of ocean crust.

Mason OU, Nakagawa T, Rosner M, Van Nostrand JD, Zhou J, Maruyama A, Fisk MR, Giovannoni SJ.

PLoS One. 2010 Nov 5;5(11):e15399. doi: 10.1371/journal.pone.0015399.


Using network analysis to explore co-occurrence patterns in soil microbial communities.

Barberán A, Bates ST, Casamayor EO, Fierer N.

ISME J. 2012 Feb;6(2):343-51. doi: 10.1038/ismej.2011.119. Epub 2011 Sep 8. Erratum in: ISME J. 2014 Apr;8(4):952.

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