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Items: 1 to 20 of 95

1.

Comparative analysis of barophily-related amino acid content in protein domains of Pyrococcus abyssi and Pyrococcus furiosus.

Yafremava LS, Di Giulio M, Caetano-Anollés G.

Archaea. 2013;2013:680436. doi: 10.1155/2013/680436. Epub 2013 Sep 26.

3.

Genome evolution at the genus level: comparison of three complete genomes of hyperthermophilic archaea.

Lecompte O, Ripp R, Puzos-Barbe V, Duprat S, Heilig R, Dietrich J, Thierry JC, Poch O.

Genome Res. 2001 Jun;11(6):981-93.

4.

The ocean abysses witnessed the origin of the genetic code.

Di Giulio M.

Gene. 2005 Feb 14;346:7-12. Epub 2004 Dec 31.

PMID:
15716095
5.

Re-annotation of two hyperthermophilic archaea Pyrococcus abyssi GE5 and Pyrococcus furiosus DSM 3638.

Gao J, Wang J.

Curr Microbiol. 2012 Feb;64(2):118-29. doi: 10.1007/s00284-011-0035-x. Epub 2011 Nov 6.

PMID:
22057919
6.

Characterization of RNase HII substrate recognition using RNase HII-argonaute chimaeric enzymes from Pyrococcus furiosus.

Kitamura S, Fujishima K, Sato A, Tsuchiya D, Tomita M, Kanai A.

Biochem J. 2010 Feb 24;426(3):337-44. doi: 10.1042/BJ20091553.

PMID:
20047562
7.

A methanogen hosted the origin of the genetic code.

Di Giulio M.

J Theor Biol. 2009 Sep 7;260(1):77-82. doi: 10.1016/j.jtbi.2009.05.030. Epub 2009 Jun 6.

PMID:
19501108
8.

Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes.

Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T.

Genome Res. 2005 Mar;15(3):352-63. Epub 2005 Feb 14.

9.

Pyrococcus genome comparison evidences chromosome shuffling-driven evolution.

Zivanovic Y, Lopez P, Philippe H, Forterre P.

Nucleic Acids Res. 2002 May 1;30(9):1902-10.

10.

CRISPR elements in the Thermococcales: evidence for associated horizontal gene transfer in Pyrococcus furiosus.

Portillo MC, Gonzalez JM.

J Appl Genet. 2009;50(4):421-30. doi: 10.1007/BF03195703.

PMID:
19875895
11.

Molecular evolution of the hyperthermophilic archaea of the Pyrococcus genus: analysis of adaptation to different environmental conditions.

Gunbin KV, Afonnikov DA, Kolchanov NA.

BMC Genomics. 2009 Dec 30;10:639. doi: 10.1186/1471-2164-10-639.

12.

Experimental and computational analysis of the secretome of the hyperthermophilic archaeon Pyrococcus furiosus.

Schmid G, Mathiesen G, Arntzen MO, Eijsink VG, Thomm M.

Extremophiles. 2013 Nov;17(6):921-30. doi: 10.1007/s00792-013-0574-0. Epub 2013 Aug 27.

13.

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, Poch O, Prieur D, Quérellou J, Ripp R, Thierry JC, Van der Oost J, Weissenbach J, Zivanovic Y, Forterre P.

Mol Microbiol. 2003 Mar;47(6):1495-512.

14.

Expression and molecular characterization of spherical particles derived from the genome of the hyperthermophilic euryarchaeote Pyrococcus furiosus.

Namba K, Hagiwara K, Tanaka H, Nakaishi Y, Chong KT, Yamashita E, Armah GE, Ono Y, Ishino Y, Omura T, Tsukihara T, Nakagawa A.

J Biochem. 2005 Aug;138(2):193-9.

PMID:
16091594
15.

Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences.

Maeder DL, Weiss RB, Dunn DM, Cherry JL, González JM, DiRuggiero J, Robb FT.

Genetics. 1999 Aug;152(4):1299-305.

16.
17.

Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.

Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT.

Proteins. 2012 Jul;80(7):1901-6. doi: 10.1002/prot.24071. Epub 2012 Apr 16.

18.

The origin of the genetic code in the ocean abysses: new comparisons confirm old observations.

Di Giulio M.

J Theor Biol. 2013 Sep 21;333:109-16. doi: 10.1016/j.jtbi.2013.05.019. Epub 2013 May 29.

PMID:
23727280
19.

Structural elucidation of an asparagine-linked oligosaccharide from the hyperthermophilic archaeon, Pyrococcus furiosus.

Fujinami D, Matsumoto M, Noguchi T, Sonomoto K, Kohda D.

Carbohydr Res. 2014 Mar 31;387:30-6. doi: 10.1016/j.carres.2014.01.021. Epub 2014 Feb 4.

PMID:
24562177
20.

Crystal structure and nucleic acid-binding activity of the CRISPR-associated protein Csx1 of Pyrococcus furiosus.

Kim YK, Kim YG, Oh BH.

Proteins. 2013 Feb;81(2):261-70. doi: 10.1002/prot.24183. Epub 2012 Oct 16.

PMID:
22987782

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