Similar articles for PMID: 24180377

Year	Number of Results
1985	1
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1998	2
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2015	13
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2017	9
2018	10
2019	6
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2022	18
2023	13
2024	0

1

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.

Chaudhary R, Burleigh JG, Fernández-Baca D. Chaudhary R, et al. Algorithms Mol Biol. 2013 Nov 1;8(1):28. doi: 10.1186/1748-7188-8-28. Algorithms Mol Biol. 2013. PMID: 24180377 Free PMC article.

2

MulRF: a software package for phylogenetic analysis using multi-copy gene trees.

Chaudhary R, Fernández-Baca D, Burleigh JG. Chaudhary R, et al. Bioinformatics. 2015 Feb 1;31(3):432-3. doi: 10.1093/bioinformatics/btu648. Epub 2014 Oct 1. Bioinformatics. 2015. PMID: 25273112

3

Assessing approaches for inferring species trees from multi-copy genes.

Chaudhary R, Boussau B, Burleigh JG, Fernández-Baca D. Chaudhary R, et al. Syst Biol. 2015 Mar;64(2):325-39. doi: 10.1093/sysbio/syu128. Epub 2014 Dec 23. Syst Biol. 2015. PMID: 25540456

4

Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network.

Tahiri N, Veriga A, Koshkarov A, Morozov B. Tahiri N, et al. J Bioinform Comput Biol. 2022 Aug;20(4):2250012. doi: 10.1142/S0219720022500123. Epub 2022 Jul 6. J Bioinform Comput Biol. 2022. PMID: 35798684

5

Are the duplication cost and Robinson-Foulds distance equivalent?

Zheng Y, Zhang L. Zheng Y, et al. J Comput Biol. 2014 Aug;21(8):578-90. doi: 10.1089/cmb.2014.0021. Epub 2014 Jul 2. J Comput Biol. 2014. PMID: 24988427 Free PMC article.

6

A Linear Time Solution to the Labeled Robinson-Foulds Distance Problem.

Briand S, Dessimoz C, El-Mabrouk N, Nevers Y. Briand S, et al. Syst Biol. 2022 Oct 12;71(6):1391-1403. doi: 10.1093/sysbio/syac028. Syst Biol. 2022. PMID: 35426933 Free PMC article.

7

Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.

Chaudhary R, Burleigh JG, Eulenstein O. Chaudhary R, et al. BMC Bioinformatics. 2012 Jun 25;13 Suppl 10(Suppl 10):S11. doi: 10.1186/1471-2105-13-S10-S11. BMC Bioinformatics. 2012. PMID: 22759416 Free PMC article.

8

Robinson-Foulds supertrees.

Bansal MS, Burleigh JG, Eulenstein O, Fernández-Baca D. Bansal MS, et al. Algorithms Mol Biol. 2010 Feb 24;5:18. doi: 10.1186/1748-7188-5-18. Algorithms Mol Biol. 2010. PMID: 20181274 Free PMC article.

9

From gene trees to species trees II: species tree inference by minimizing deep coalescence events.

Zhang L. Zhang L. IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov-Dec;8(6):1685-91. doi: 10.1109/TCBB.2011.83. IEEE/ACM Trans Comput Biol Bioinform. 2011. PMID: 21576759

10

Species tree inference by minimizing deep coalescences.

Than C, Nakhleh L. Than C, et al. PLoS Comput Biol. 2009 Sep;5(9):e1000501. doi: 10.1371/journal.pcbi.1000501. Epub 2009 Sep 11. PLoS Comput Biol. 2009. PMID: 19749978 Free PMC article.

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