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Items: 1 to 20 of 100

1.

Large-scale detection of in vivo transcription errors.

Gout JF, Thomas WK, Smith Z, Okamoto K, Lynch M.

Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18584-9. doi: 10.1073/pnas.1309843110. Epub 2013 Oct 28.

2.

Small RNA library cloning procedure for deep sequencing of specific endogenous siRNA classes in Caenorhabditis elegans.

Ow MC, Lau NC, Hall SE.

Methods Mol Biol. 2014;1173:59-70. doi: 10.1007/978-1-4939-0931-5_6.

3.

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans.

Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG.

Genome Biol. 2009;10(9):R101. doi: 10.1186/gb-2009-10-9-r101. Epub 2009 Sep 24.

4.

Library Construction for Mutation Identification by Whole-Genome Sequencing.

Smith HE.

Methods Mol Biol. 2015;1327:1-9. doi: 10.1007/978-1-4939-2842-2_1.

PMID:
26423963
5.

Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes.

Smith LM, Hartmann L, Drewe P, Bohnert R, Kahles A, Lanz C, Rätsch G.

RNA Biol. 2012 May;9(5):596-609. doi: 10.4161/rna.19683. Epub 2012 May 1.

PMID:
22614838
6.

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

Oyola SO, Otto TD, Gu Y, Maslen G, Manske M, Campino S, Turner DJ, Macinnis B, Kwiatkowski DP, Swerdlow HP, Quail MA.

BMC Genomics. 2012 Jan 3;13:1. doi: 10.1186/1471-2164-13-1.

7.

Detecting expressed genes using CAGE.

Murata M, Nishiyori-Sueki H, Kojima-Ishiyama M, Carninci P, Hayashizaki Y, Itoh M.

Methods Mol Biol. 2014;1164:67-85. doi: 10.1007/978-1-4939-0805-9_7.

PMID:
24927836
8.

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes.

Denver DR, Dolan PC, Wilhelm LJ, Sung W, Lucas-Lledó JI, Howe DK, Lewis SC, Okamoto K, Thomas WK, Lynch M, Baer CF.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16310-4. doi: 10.1073/pnas.0904895106. Epub 2009 Sep 10.

9.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

10.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

11.

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs.

Jan CH, Friedman RC, Ruby JG, Bartel DP.

Nature. 2011 Jan 6;469(7328):97-101. doi: 10.1038/nature09616. Epub 2010 Nov 17.

12.

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.

Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.

BMC Genomics. 2011 May 12;12:234. doi: 10.1186/1471-2164-12-234.

13.

Stranded Whole Transcriptome RNA-Seq for All RNA Types.

Miller DF, Yan PX, Fang F, Buechlein A, Ford JB, Tang H, Huang TH, Burow ME, Liu Y, Rusch DB, Nephew KP.

Curr Protoc Hum Genet. 2015 Jan 20;84:11.14.1-23. doi: 10.1002/0471142905.hg1114s84.

14.

Isolation and characterization of transcription fidelity mutants.

Strathern JN, Jin DJ, Court DL, Kashlev M.

Biochim Biophys Acta. 2012 Jul;1819(7):694-9. doi: 10.1016/j.bbagrm.2012.02.005. Epub 2012 Feb 16. Review.

PMID:
22366339
15.

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.

Blazie SM, Babb C, Wilky H, Rawls A, Park JG, Mangone M.

BMC Biol. 2015 Jan 20;13:4. doi: 10.1186/s12915-015-0116-6.

16.
17.

High-throughput capturing and characterization of mutations in essential genes of Caenorhabditis elegans.

Chu JS, Chua SY, Wong K, Davison AM, Johnsen R, Baillie DL, Rose AM.

BMC Genomics. 2014 May 12;15:361. doi: 10.1186/1471-2164-15-361.

18.

High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.

Lou DI, Hussmann JA, McBee RM, Acevedo A, Andino R, Press WH, Sawyer SL.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19872-7. doi: 10.1073/pnas.1319590110. Epub 2013 Nov 15.

19.

Direct assessment of transcription fidelity by high-resolution RNA sequencing.

Imashimizu M, Oshima T, Lubkowska L, Kashlev M.

Nucleic Acids Res. 2013 Oct;41(19):9090-104. doi: 10.1093/nar/gkt698. Epub 2013 Aug 7.

20.

Generation of an external guide sequence library for a reverse genetic screen in Caenorhabditis elegans.

Yan Q, Zhao R, Zheng W, Yin C, Zhang B, Ma W.

BMC Biotechnol. 2009 May 20;9:47. doi: 10.1186/1472-6750-9-47.

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