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Items: 1 to 20 of 99


eALPS: estimating abundance levels in pooled sequencing using available genotyping data.

Eskin I, Hormozdiari F, Conde L, Riby J, Skibola CF, Eskin E, Halperin E.

J Comput Biol. 2013 Nov;20(11):861-77. doi: 10.1089/cmb.2013.0105. Epub 2013 Oct 21.


Quantitative group testing-based overlapping pool sequencing to identify rare variant carriers.

Cao CC, Li C, Sun X.

BMC Bioinformatics. 2014 Jun 17;15:195. doi: 10.1186/1471-2105-15-195.


Genotyping common and rare variation using overlapping pool sequencing.

He D, Zaitlen N, Pasaniuc B, Eskin E, Halperin E.

BMC Bioinformatics. 2011;12 Suppl 6:S2. doi: 10.1186/1471-2105-12-S6-S2. Epub 2011 Jul 28.


Weighted pooling--practical and cost-effective techniques for pooled high-throughput sequencing.

Golan D, Erlich Y, Rosset S.

Bioinformatics. 2012 Jun 15;28(12):i197-206. doi: 10.1093/bioinformatics/bts208.


Analysis and optimal design for association studies using next-generation sequencing with case-control pools.

Liang WE, Thomas DC, Conti DV.

Genet Epidemiol. 2012 Dec;36(8):870-81. doi: 10.1002/gepi.21681. Epub 2012 Sep 12.


Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.


Comparison of genotyping using pooled DNA samples (allelotyping) and individual genotyping using the affymetrix genome-wide human SNP array 6.0.

Teumer A, Ernst FD, Wiechert A, Uhr K, Nauck M, Petersmann A, Völzke H, Völker U, Homuth G.

BMC Genomics. 2013 Jul 26;14:506. doi: 10.1186/1471-2164-14-506.


SNP calling by sequencing pooled samples.

Raineri E, Ferretti L, Esteve-Codina A, Nevado B, Heath S, Pérez-Enciso M.

BMC Bioinformatics. 2012 Sep 20;13:239. doi: 10.1186/1471-2105-13-239.


Allele frequency calibration for SNP based genotyping of DNA pools: A regression based local-global error fusion method.

Rahman A, Hellicar A, Smith D, Henshall JM.

Comput Biol Med. 2015 Jun;61:48-55. doi: 10.1016/j.compbiomed.2015.03.020. Epub 2015 Mar 26.


Estimating the effect of SNP genotype on quantitative traits from pooled DNA samples.

Henshall JM, Hawken RJ, Dominik S, Barendse W.

Genet Sel Evol. 2012 Apr 17;44:12. doi: 10.1186/1297-9686-44-12.


Estimating genomic heritabilities at the level of family-pool samples of perennial ryegrass using genotyping-by-sequencing.

Ashraf BH, Byrne S, Fé D, Czaban A, Asp T, Pedersen MG, Lenk I, Roulund N, Didion T, Jensen CS, Jensen J, Janss LL.

Theor Appl Genet. 2016 Jan;129(1):45-52. doi: 10.1007/s00122-015-2607-9. Epub 2015 Sep 25.


SNPest: a probabilistic graphical model for estimating genotypes.

Lindgreen S, Krogh A, Pedersen JS.

BMC Res Notes. 2014 Oct 7;7:698. doi: 10.1186/1756-0500-7-698.


Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.

Yang WY, Hormozdiari F, Wang Z, He D, Pasaniuc B, Eskin E.

Bioinformatics. 2013 Sep 15;29(18):2245-52. doi: 10.1093/bioinformatics/btt386. Epub 2013 Jul 3.


Rare variant discovery and calling by sequencing pooled samples with overlaps.

Wang W, Yin X, Soo Pyon Y, Hayes M, Li J.

Bioinformatics. 2013 Jan 1;29(1):29-38. doi: 10.1093/bioinformatics/bts645. Epub 2012 Oct 27.


Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.

Cheng AY, Teo YY, Ong RT.

Bioinformatics. 2014 Jun 15;30(12):1707-13. doi: 10.1093/bioinformatics/btu067. Epub 2014 Feb 19.


Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.


Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples.

Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE.

Front Genet. 2011 Aug 17;2:51. doi: 10.3389/fgene.2011.00051. eCollection 2011.


A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214. Erratum in: Bioinformatics. 2016 Oct 15;32(20):3213.


Overlapping pools for high-throughput targeted resequencing.

Prabhu S, Pe'er I.

Genome Res. 2009 Jul;19(7):1254-61. doi: 10.1101/gr.088559.108. Epub 2009 May 15.

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