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Items: 1 to 20 of 100

1.

Water mediation is essential to nucleation of β-turn formation in peptide folding motifs.

Busch S, Bruce CD, Redfield C, Lorenz CD, McLain SE.

Angew Chem Int Ed Engl. 2013 Dec 2;52(49):13091-5. doi: 10.1002/anie.201307657. Epub 2013 Oct 15.

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Amino acids with hydrogen-bonding side chains have an intrinsic tendency to sample various turn conformations in aqueous solution.

Hagarman A, Mathieu D, Toal S, Measey TJ, Schwalbe H, Schweitzer-Stenner R.

Chemistry. 2011 Jun 6;17(24):6789-97. doi: 10.1002/chem.201100016. Epub 2011 May 5.

PMID:
21547966
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7.

Water network dynamics at the critical moment of a peptide's beta-turn formation: a molecular dynamics study.

Karvounis G, Nerukh D, Glen RC.

J Chem Phys. 2004 Sep 8;121(10):4925-35.

PMID:
15332928
8.

beta-hairpin folding and stability: molecular dynamics simulations of designed peptides in aqueous solution.

Santiveri CM, Jiménez MA, Rico M, Van Gunsteren WF, Daura X.

J Pept Sci. 2004 Sep;10(9):546-65.

PMID:
15473263
9.

The mechanism of antiparallel β-sheet formation based on conditioned self-avoiding walk.

Goh BC, Leong HW, Qu X, Chew LY.

Eur Phys J E Soft Matter. 2012 Apr;35(4):9704. doi: 10.1140/epje/i2012-12027-8. Epub 2012 Apr 18.

PMID:
22526978
10.

Helix nucleation kinetics from molecular simulations in explicit solvent.

Hummer G, García AE, Garde S.

Proteins. 2001 Jan 1;42(1):77-84.

PMID:
11093262
11.

Theoretical prediction of the basic helix types in alpha,beta-hybrid peptides.

Baldauf C, Günther R, Hofmann HJ.

Biopolymers. 2006;84(4):408-13.

PMID:
16506208
12.

Structural and thermodynamics characters of isolated α-syn12 peptide: long-time temperature replica-exchange molecular dynamics in aqueous solution.

Cao Z, Liu L, Wu P, Wang J.

Acta Biochim Biophys Sin (Shanghai). 2011 Mar;43(3):172-80. doi: 10.1093/abbs/gmr002. Epub 2011 Feb 2. Erratum in: Acta Biochim Biophys Sin (Shanghai). 2011 Apr;43(4):335.

PMID:
21289072
13.

Peptide folding driven by Van der Waals interactions.

Sung SS.

Protein Sci. 2015 Sep;24(9):1383-8. doi: 10.1002/pro.2710. Epub 2015 Jun 11.

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Helix formation in preorganized beta/gamma-peptide foldamers: hydrogen-bond analogy to the alpha-helix without alpha-amino acid residues.

Guo L, Almeida AM, Zhang W, Reidenbach AG, Choi SH, Guzei IA, Gellman SH.

J Am Chem Soc. 2010 Jun 16;132(23):7868-9. doi: 10.1021/ja103233a.

16.

Beta-hairpin and beta-sheet formation in designed linear peptides.

Ramírez-Alvarado M, Kortemme T, Blanco FJ, Serrano L.

Bioorg Med Chem. 1999 Jan;7(1):93-103.

PMID:
10199660
17.

Role of different β-turns in β-hairpin conformation and stability studied by optical spectroscopy.

Wu L, McElheny D, Setnicka V, Hilario J, Keiderling TA.

Proteins. 2012 Jan;80(1):44-60. doi: 10.1002/prot.23140. Epub 2011 Oct 12.

PMID:
21989967
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19.

Folding propensities of peptide fragments of myoglobin.

Reymond MT, Merutka G, Dyson HJ, Wright PE.

Protein Sci. 1997 Mar;6(3):706-16.

20.

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