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Items: 1 to 20 of 96

1.

MOBBED: a computational data infrastructure for handling large collections of event-rich time series datasets in MATLAB.

Cockfield J, Su K, Robbins KA.

Front Neuroinform. 2013 Oct 10;7:20. doi: 10.3389/fninf.2013.00020. eCollection 2013.

2.

EEGVIS: A MATLAB Toolbox for Browsing, Exploring, and Viewing Large Datasets.

Robbins KA.

Front Neuroinform. 2012 May 28;6:17. doi: 10.3389/fninf.2012.00017. eCollection 2012.

3.

BLINKER: Automated Extraction of Ocular Indices from EEG Enabling Large-Scale Analysis.

Kleifges K, Bigdely-Shamlo N, Kerick SE, Robbins KA.

Front Neurosci. 2017 Feb 3;11:12. doi: 10.3389/fnins.2017.00012. eCollection 2017.

4.

CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave.

Oosterhof NN, Connolly AC, Haxby JV.

Front Neuroinform. 2016 Jul 22;10:27. doi: 10.3389/fninf.2016.00027. eCollection 2016.

5.

Recording human electrocorticographic (ECoG) signals for neuroscientific research and real-time functional cortical mapping.

Hill NJ, Gupta D, Brunner P, Gunduz A, Adamo MA, Ritaccio A, Schalk G.

J Vis Exp. 2012 Jun 26;(64). pii: 3993. doi: 10.3791/3993.

6.
7.

MoBILAB: an open source toolbox for analysis and visualization of mobile brain/body imaging data.

Ojeda A, Bigdely-Shamlo N, Makeig S.

Front Hum Neurosci. 2014 Mar 5;8:121. doi: 10.3389/fnhum.2014.00121. eCollection 2014.

8.

Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG.

Bigdely-Shamlo N, Cockfield J, Makeig S, Rognon T, La Valle C, Miyakoshi M, Robbins KA.

Front Neuroinform. 2016 Oct 17;10:42. eCollection 2016.

9.

In Vivo Observations of Rapid Scattered Light Changes Associated with Neurophysiological Activity.

Rector DM, Yao X, Harper RM, George JS.

In: Frostig RD, editor. In Vivo Optical Imaging of Brain Function. 2nd edition. Boca Raton (FL): CRC Press/Taylor & Francis; 2009. Chapter 5.

10.

COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.

Bose T, Haque MM, Reddy C, Mande SS.

PLoS One. 2015 Nov 11;10(11):e0142102. doi: 10.1371/journal.pone.0142102. eCollection 2015.

11.

NeuroManager: a workflow analysis based simulation management engine for computational neuroscience.

Stockton DB, Santamaria F.

Front Neuroinform. 2015 Oct 13;9:24. doi: 10.3389/fninf.2015.00024. eCollection 2015.

12.

A high-performance spatial database based approach for pathology imaging algorithm evaluation.

Wang F, Kong J, Gao J, Cooper LA, Kurc T, Zhou Z, Adler D, Vergara-Niedermayr C, Katigbak B, Brat DJ, Saltz JH.

J Pathol Inform. 2013 Mar 14;4:5. doi: 10.4103/2153-3539.108543. Print 2013.

13.

The TimeStudio Project: An open source scientific workflow system for the behavioral and brain sciences.

Nyström P, Falck-Ytter T, Gredebäck G.

Behav Res Methods. 2016 Jun;48(2):542-52. doi: 10.3758/s13428-015-0616-x.

14.

Integration of EEG source imaging and fMRI during continuous viewing of natural movies.

Whittingstall K, Bartels A, Singh V, Kwon S, Logothetis NK.

Magn Reson Imaging. 2010 Oct;28(8):1135-42. doi: 10.1016/j.mri.2010.03.042. Epub 2010 Jun 25.

PMID:
20579829
15.

APP: an Automated Proteomics Pipeline for the analysis of mass spectrometry data based on multiple open access tools.

Malm EK, Srivastava V, Sundqvist G, Bulone V.

BMC Bioinformatics. 2014 Dec 30;15:441. doi: 10.1186/s12859-014-0441-8.

16.

Engineering Aspects of Olfaction.

Persaud KC.

In: Persaud KC, Marco S, Gutiérrez-Gálvez A, editors. Neuromorphic Olfaction. Boca Raton (FL): CRC Press/Taylor & Francis; 2013. Chapter 1.

17.

ADAM: automated data management for research datasets.

Woodbridge M, Tomlinson CD, Butcher SA.

Bioinformatics. 2013 Jan 1;29(1):146-7. doi: 10.1093/bioinformatics/bts644. Epub 2012 Oct 29.

18.

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission.

Hankeln W, Buttigieg PL, Fink D, Kottmann R, Yilmaz P, Glöckner FO.

BMC Bioinformatics. 2010 Jun 30;11:358. doi: 10.1186/1471-2105-11-358.

19.

Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users.

Watts NA, Feltus FA.

Bioinformatics. 2017 Feb 15;33(4):627-628. doi: 10.1093/bioinformatics/btw679.

20.

IBEX: an open infrastructure software platform to facilitate collaborative work in radiomics.

Zhang L, Fried DV, Fave XJ, Hunter LA, Yang J, Court LE.

Med Phys. 2015 Mar;42(3):1341-53. doi: 10.1118/1.4908210.

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