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Items: 1 to 20 of 152

1.

HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects.

Saunders RE, Instrell R, Rispoli R, Jiang M, Howell M.

Database (Oxford). 2013 Oct 11;2013:bat072. doi: 10.1093/database/bat072.

2.

GUItars: a GUI tool for analysis of high-throughput RNA interference screening data.

Goktug AN, Ong SS, Chen T.

PLoS One. 2012;7(11):e49386. doi: 10.1371/journal.pone.0049386.

3.

Use of cryopreserved cell aliquots in the high-throughput screening of small interfering RNA libraries.

Swearingen EA, Fajardo F, Wang X, Watson JE, Quon KC, Kassner PD.

J Biomol Screen. 2010 Jun;15(5):469-77. doi: 10.1177/1087057110365899.

PMID:
20371867
4.

FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets.

Sims D, Bursteinas B, Gao Q, Zvelebil M, Baum B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D479-83.

5.

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.

Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.

BMC Bioinformatics. 2008 Jun 5;9:264. doi: 10.1186/1471-2105-9-264.

6.

Formalization, annotation and analysis of diverse drug and probe screening assay datasets using the BioAssay Ontology (BAO).

Vempati UD, Przydzial MJ, Chung C, Abeyruwan S, Mir A, Sakurai K, Visser U, Lemmon VP, Schürer SC.

PLoS One. 2012;7(11):e49198. doi: 10.1371/journal.pone.0049198.

7.

GenomeRNAi: a database for cell-based RNAi phenotypes.

Horn T, Arziman Z, Berger J, Boutros M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D492-7.

8.

Chemical & RNAi screening at MSKCC: a collaborative platform to discover & repurpose drugs to fight disease.

Bhinder B, Antczak C, Shum D, Radu C, Mahida JP, Liu-Sullivan N, Ibanez G, Raja BS, Calder PA, Djaballah H.

Comb Chem High Throughput Screen. 2014 May;17(4):298-318.

9.

Simultaneous analysis of large-scale RNAi screens for pathogen entry.

Rämö P, Drewek A, Arrieumerlou C, Beerenwinkel N, Ben-Tekaya H, Cardel B, Casanova A, Conde-Alvarez R, Cossart P, Csúcs G, Eicher S, Emmenlauer M, Greber U, Hardt WD, Helenius A, Kasper C, Kaufmann A, Kreibich S, Kühbacher A, Kunszt P, Low SH, Mercer J, Mudrak D, Muntwiler S, Pelkmans L, Pizarro-Cerdá J, Podvinec M, Pujadas E, Rinn B, Rouilly V, Schmich F, Siebourg-Polster J, Snijder B, Stebler M, Studer G, Szczurek E, Truttmann M, von Mering C, Vonderheit A, Yakimovich A, Bühlmann P, Dehio C.

BMC Genomics. 2014 Dec 22;15:1162. doi: 10.1186/1471-2164-15-1162.

10.

Median absolute deviation to improve hit selection for genome-scale RNAi screens.

Chung N, Zhang XD, Kreamer A, Locco L, Kuan PF, Bartz S, Linsley PS, Ferrer M, Strulovici B.

J Biomol Screen. 2008 Feb;13(2):149-58. doi: 10.1177/1087057107312035.

PMID:
18216396
11.

BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results.

Visser U, Abeyruwan S, Vempati U, Smith RP, Lemmon V, Schürer SC.

BMC Bioinformatics. 2011 Jun 24;12:257. doi: 10.1186/1471-2105-12-257.

12.

Common seed analysis to identify off-target effects in siRNA screens.

Marine S, Bahl A, Ferrer M, Buehler E.

J Biomol Screen. 2012 Mar;17(3):370-8. doi: 10.1177/1087057111427348.

PMID:
22086724
13.

High-content siRNA screening.

Krausz E.

Mol Biosyst. 2007 Apr;3(4):232-40. Review.

PMID:
17372651
14.

MScreen: an integrated compound management and high-throughput screening data storage and analysis system.

Jacob RT, Larsen MJ, Larsen SD, Kirchhoff PD, Sherman DH, Neubig RR.

J Biomol Screen. 2012 Sep;17(8):1080-7. doi: 10.1177/1087057112450186.

15.

Designing, optimizing, and implementing high-throughput siRNA genomic screening with glioma cells for the discovery of survival genes and novel drug targets.

Thaker NG, McDonald PR, Zhang F, Kitchens CA, Shun TY, Pollack IF, Lazo JS.

J Neurosci Methods. 2010 Jan 15;185(2):204-12. doi: 10.1016/j.jneumeth.2009.09.023.

PMID:
19782703
16.
17.

The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria.

Rangel LT, Novaes J, Durham AM, Madeira AM, Gruber A.

Database (Oxford). 2013 Feb 14;2013:bat006. doi: 10.1093/database/bat006.

18.

Factors affecting reproducibility between genome-scale siRNA-based screens.

Barrows NJ, Le Sommer C, Garcia-Blanco MA, Pearson JL.

J Biomol Screen. 2010 Aug;15(7):735-47. doi: 10.1177/1087057110374994.

19.

High-throughput RNAi screening for the identification of novel targets.

Henderson MC, Azorsa DO.

Methods Mol Biol. 2013;986:89-95. doi: 10.1007/978-1-62703-311-4_6.

PMID:
23436407
20.

Using information from historical high-throughput screens to predict active compounds.

Riniker S, Wang Y, Jenkins JL, Landrum GA.

J Chem Inf Model. 2014 Jul 28;54(7):1880-91. doi: 10.1021/ci500190p.

PMID:
24933016
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