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Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis.

Hua Z, Pool JE, Schmitz RJ, Schultz MD, Shiu SH, Ecker JR, Vierstra RD.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16927-32. doi: 10.1073/pnas.1316009110. Epub 2013 Sep 30.


Genome-wide analysis of S-Locus F-box-like genes in Arabidopsis thaliana.

Wang L, Dong L, Zhang Y, Zhang Y, Wu W, Deng X, Xue Y.

Plant Mol Biol. 2004 Dec;56(6):929-45. Epub 2005 Apr 7.


A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins.

Kuroda H, Yanagawa Y, Takahashi N, Horii Y, Matsui M.

PLoS One. 2012;7(11):e50009. doi: 10.1371/journal.pone.0050009. Epub 2012 Nov 15.


Plant F-box protein evolution is determined by lineage-specific timing of major gene family expansion waves.

Navarro-Quezada A, Schumann N, Quint M.

PLoS One. 2013 Jul 19;8(7):e68672. doi: 10.1371/journal.pone.0068672. Print 2013.


Site-specific methylation in gene coding region underlies transcriptional silencing of the Phytochrome A epiallele in Arabidopsis thaliana.

Rangani G, Khodakovskaya M, Alimohammadi M, Hoecker U, Srivastava V.

Plant Mol Biol. 2012 May;79(1-2):191-202. doi: 10.1007/s11103-012-9906-1. Epub 2012 Apr 1.


The Arabidopsis STRESS RESPONSE SUPPRESSOR DEAD-box RNA helicases are nucleolar- and chromocenter-localized proteins that undergo stress-mediated relocalization and are involved in epigenetic gene silencing.

Khan A, Garbelli A, Grossi S, Florentin A, Batelli G, Acuna T, Zolla G, Kaye Y, Paul LK, Zhu JK, Maga G, Grafi G, Barak S.

Plant J. 2014 Jul;79(1):28-43. doi: 10.1111/tpj.12533. Epub 2014 May 27.


Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.

Naumann K, Fischer A, Hofmann I, Krauss V, Phalke S, Irmler K, Hause G, Aurich AC, Dorn R, Jenuwein T, Reuter G.

EMBO J. 2005 Apr 6;24(7):1418-29. Epub 2005 Mar 17.


Genome-Wide Dosage-Dependent and -Independent Regulation Contributes to Gene Expression and Evolutionary Novelty in Plant Polyploids.

Shi X, Zhang C, Ko DK, Chen ZJ.

Mol Biol Evol. 2015 Sep;32(9):2351-66. doi: 10.1093/molbev/msv116. Epub 2015 May 14.


Mechanisms underlying epigenetic regulation in Arabidopsis thaliana.

Jones AL, Sung S.

Integr Comp Biol. 2014 Jul;54(1):61-7. doi: 10.1093/icb/icu030. Epub 2014 May 7. Review.


JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.

Deng S, Xu J, Liu J, Kim SH, Shi S, Chua NH.

Plant J. 2015 Sep;83(5):770-82. doi: 10.1111/tpj.12924. Epub 2015 Jul 31.


Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.

Mathieu O, Reinders J, Caikovski M, Smathajitt C, Paszkowski J.

Cell. 2007 Sep 7;130(5):851-62.


Coordination of the vernalization response through a VIN3 and FLC gene family regulatory network in Arabidopsis.

Kim DH, Sung S.

Plant Cell. 2013 Feb;25(2):454-69. doi: 10.1105/tpc.112.104760. Epub 2013 Feb 15.


Global analysis of allele-specific expression in Arabidopsis thaliana.

Zhang X, Borevitz JO.

Genetics. 2009 Aug;182(4):943-54. doi: 10.1534/genetics.109.103499. Epub 2009 May 27.


Integrative epigenomic mapping defines four main chromatin states in Arabidopsis.

Roudier F, Ahmed I, Bérard C, Sarazin A, Mary-Huard T, Cortijo S, Bouyer D, Caillieux E, Duvernois-Berthet E, Al-Shikhley L, Giraut L, Després B, Drevensek S, Barneche F, Dèrozier S, Brunaud V, Aubourg S, Schnittger A, Bowler C, Martin-Magniette ML, Robin S, Caboche M, Colot V.

EMBO J. 2011 May 18;30(10):1928-38. doi: 10.1038/emboj.2011.103. Epub 2011 Apr 12.


Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor.

Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2617-22. doi: 10.1073/pnas.1019217108. Epub 2011 Jan 25.


The epigenome and plant development.

He G, Elling AA, Deng XW.

Annu Rev Plant Biol. 2011;62:411-35. doi: 10.1146/annurev-arplant-042110-103806. Review.


Tandem duplication of the FLC locus and the origin of a new gene in Arabidopsis related species and their functional implications in allopolyploids.

Nah G, Jeffrey Chen Z.

New Phytol. 2010 Apr;186(1):228-38. doi: 10.1111/j.1469-8137.2009.03164.x. Epub 2010 Jan 22.


Expression and interaction analysis of Arabidopsis Skp1-related genes.

Takahashi N, Kuroda H, Kuromori T, Hirayama T, Seki M, Shinozaki K, Shimada H, Matsui M.

Plant Cell Physiol. 2004 Jan;45(1):83-91.


Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1.

Latrasse D, Germann S, Houba-Hérin N, Dubois E, Bui-Prodhomme D, Hourcade D, Juul-Jensen T, Le Roux C, Majira A, Simoncello N, Granier F, Taconnat L, Renou JP, Gaudin V.

PLoS One. 2011 Jan 31;6(1):e16592. doi: 10.1371/journal.pone.0016592.

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