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Items: 1 to 20 of 141

1.

Mapping human epigenomes.

Rivera CM, Ren B.

Cell. 2013 Sep 26;155(1):39-55. doi: 10.1016/j.cell.2013.09.011. Review.

2.

Introduction into the analysis of high-throughput-sequencing based epigenome data.

Huss M.

Brief Bioinform. 2010 Sep;11(5):512-23. doi: 10.1093/bib/bbq014. Review.

PMID:
20457755
3.

Assaying the epigenome in limited numbers of cells.

Greenleaf WJ.

Methods. 2015 Jan 15;72:51-6. doi: 10.1016/j.ymeth.2014.10.010. Review.

4.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Review.

PMID:
21825079
5.

From genome to epigenome.

Murrell A, Rakyan VK, Beck S.

Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R3-R10. Review.

PMID:
15809270
6.

DNA immunoprecipitation semiconductor sequencing (DIP-SC-seq) as a rapid method to generate genome wide epigenetic signatures.

Thomson JP, Fawkes A, Ottaviano R, Hunter JM, Shukla R, Mjoseng HK, Clark R, Coutts A, Murphy L, Meehan RR.

Sci Rep. 2015 May 14;5:9778. doi: 10.1038/srep09778.

7.

Epigenome mapping in normal and disease States.

Maunakea AK, Chepelev I, Zhao K.

Circ Res. 2010 Aug 6;107(3):327-39. doi: 10.1161/CIRCRESAHA.110.222463. Review.

8.

Single-molecule, genome-scale analyses of DNA modifications: exposing the epigenome with next-generation technologies.

Zillner K, Németh A.

Epigenomics. 2012 Aug;4(4):403-14. doi: 10.2217/epi.12.30. Review.

PMID:
22920180
9.

Detection of allele-specific methylation through a generalized heterogeneous epigenome model.

Peng Q, Ecker JR.

Bioinformatics. 2012 Jun 15;28(12):i163-71. doi: 10.1093/bioinformatics/bts231.

10.

Integrative analysis of 111 reference human epigenomes.

Roadmap Epigenomics Consortium., Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, Sarkar A, Quon G, Sandstrom RS, Eaton ML, Wu YC, Pfenning AR, Wang X, Claussnitzer M, Liu Y, Coarfa C, Harris RA, Shoresh N, Epstein CB, Gjoneska E, Leung D, Xie W, Hawkins RD, Lister R, Hong C, Gascard P, Mungall AJ, Moore R, Chuah E, Tam A, Canfield TK, Hansen RS, Kaul R, Sabo PJ, Bansal MS, Carles A, Dixon JR, Farh KH, Feizi S, Karlic R, Kim AR, Kulkarni A, Li D, Lowdon R, Elliott G, Mercer TR, Neph SJ, Onuchic V, Polak P, Rajagopal N, Ray P, Sallari RC, Siebenthall KT, Sinnott-Armstrong NA, Stevens M, Thurman RE, Wu J, Zhang B, Zhou X, Beaudet AE, Boyer LA, De Jager PL, Farnham PJ, Fisher SJ, Haussler D, Jones SJ, Li W, Marra MA, McManus MT, Sunyaev S, Thomson JA, Tlsty TD, Tsai LH, Wang W, Waterland RA, Zhang MQ, Chadwick LH, Bernstein BE, Costello JF, Ecker JR, Hirst M, Meissner A, Milosavljevic A, Ren B, Stamatoyannopoulos JA, Wang T, Kellis M.

Nature. 2015 Feb 19;518(7539):317-30. doi: 10.1038/nature14248.

11.

Techniques to study epigenetic control and the epigenome in parasites.

Nardelli SC, Ting LM, Kim K.

Methods Mol Biol. 2015;1201:177-91. doi: 10.1007/978-1-4939-1438-8_10.

PMID:
25388114
12.

Epigenome data release: a participant-centered approach to privacy protection.

Dyke SO, Cheung WA, Joly Y, Ammerpohl O, Lutsik P, Rothstein MA, Caron M, Busche S, Bourque G, Rönnblom L, Flicek P, Beck S, Hirst M, Stunnenberg H, Siebert R, Walter J, Pastinen T.

Genome Biol. 2015 Jul 17;16:142. doi: 10.1186/s13059-015-0723-0.

13.

Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies.

Yan H, Tian S, Slager SL, Sun Z, Ordog T.

Am J Epidemiol. 2016 Jan 15;183(2):96-109. doi: 10.1093/aje/kwv187.

14.

Epigenomics: sequencing the methylome.

Hirst M.

Methods Mol Biol. 2013;973:39-54. doi: 10.1007/978-1-62703-281-0_3.

PMID:
23412782
15.

Whole-genome DNA methylation profiling with nucleotide resolution.

Hsieh TF.

Methods Mol Biol. 2015;1284:27-40. doi: 10.1007/978-1-4939-2444-8_2.

PMID:
25757766
16.

Epigenome sequencing comes of age in development, differentiation and disease mechanism research.

Zhao Q, Zhang Y.

Epigenomics. 2011 Apr;3(2):207-20. doi: 10.2217/epi.10.78. Review.

PMID:
22122282
17.

Analysis of gene-specific and genome-wide sperm DNA methylation.

Hammoud SS, Cairns BR, Carrell DT.

Methods Mol Biol. 2013;927:451-8. Review.

PMID:
22992936
18.

Epigenome-wide association studies for common human diseases.

Rakyan VK, Down TA, Balding DJ, Beck S.

Nat Rev Genet. 2011 Jul 12;12(8):529-41. doi: 10.1038/nrg3000. Review.

19.

The epigenomics of embryonic stem cell differentiation.

Kraushaar DC, Zhao K.

Int J Biol Sci. 2013 Dec 9;9(10):1134-44. doi: 10.7150/ijbs.7998. Review.

20.

Single-base resolution analysis of DNA epigenome via high-throughput sequencing.

Peng J, Xia B, Yi C.

Sci China Life Sci. 2016 Mar;59(3):219-26. doi: 10.1007/s11427-016-5013-x. Review.

PMID:
26825949

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