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Items: 1 to 20 of 127

1.

Regulation of the boundaries of accessible chromatin.

Chai X, Nagarajan S, Kim K, Lee K, Choi JK.

PLoS Genet. 2013;9(9):e1003778. doi: 10.1371/journal.pgen.1003778. Epub 2013 Sep 12.

2.

In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae.

Gossett AJ, Lieb JD.

PLoS Genet. 2012;8(6):e1002771. doi: 10.1371/journal.pgen.1002771. Epub 2012 Jun 21.

3.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

4.
5.

Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions.

Benner C, Konovalov S, Mackintosh C, Hutt KR, Stunnenberg R, Garcia-Bassets I.

PLoS Genet. 2013 Nov;9(11):e1003906. doi: 10.1371/journal.pgen.1003906. Epub 2013 Nov 7.

6.

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription.

van Bakel H, Tsui K, Gebbia M, Mnaimneh S, Hughes TR, Nislow C.

PLoS Genet. 2013 May;9(5):e1003479. doi: 10.1371/journal.pgen.1003479. Epub 2013 May 2.

7.

Histone modification: cause or cog?

Henikoff S, Shilatifard A.

Trends Genet. 2011 Oct;27(10):389-96. doi: 10.1016/j.tig.2011.06.006. Epub 2011 Jul 20.

PMID:
21764166
8.

Mechanisms by which transcription factors gain access to target sequence elements in chromatin.

Guertin MJ, Lis JT.

Curr Opin Genet Dev. 2013 Apr;23(2):116-23. doi: 10.1016/j.gde.2012.11.008. Epub 2012 Dec 19. Review.

9.

Genome-Wide Profiling of PARP1 Reveals an Interplay with Gene Regulatory Regions and DNA Methylation.

Nalabothula N, Al-jumaily T, Eteleeb AM, Flight RM, Xiaorong S, Moseley H, Rouchka EC, Fondufe-Mittendorf YN.

PLoS One. 2015 Aug 25;10(8):e0135410. doi: 10.1371/journal.pone.0135410. eCollection 2015.

10.

Systematic dissection of roles for chromatin regulators in a yeast stress response.

Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ.

PLoS Biol. 2012;10(7):e1001369. doi: 10.1371/journal.pbio.1001369. Epub 2012 Jul 31.

11.

Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.

Nozaki T, Yachie N, Ogawa R, Kratz A, Saito R, Tomita M.

BMC Genomics. 2011 Aug 17;12:416. doi: 10.1186/1471-2164-12-416.

12.

Transcription factor-dependent chromatin remodeling at heat shock and copper-responsive promoters in Chlamydomonas reinhardtii.

Strenkert D, Schmollinger S, Sommer F, Schulz-Raffelt M, Schroda M.

Plant Cell. 2011 Jun;23(6):2285-301. doi: 10.1105/tpc.111.085266. Epub 2011 Jun 24.

13.

[Chromatin structure and transcription regulation in Saccharomyces cerevisiae].

Osipov SA, Preobrazhenskaia OV, Karpov VL.

Mol Biol (Mosk). 2010 Nov-Dec;44(6):966-79. Russian.

PMID:
21290820
14.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
15.

Opening windows to the genome.

Whitehouse I, Tsukiyama T.

Cell. 2009 May 1;137(3):400-2. doi: 10.1016/j.cell.2009.04.026.

16.

Understanding the chromatin remodeling code.

Ha M.

Plant Sci. 2013 Oct;211:137-45. doi: 10.1016/j.plantsci.2013.07.006. Epub 2013 Jul 24. Review.

PMID:
23987819
17.

Cardiac myosin heavy chain gene regulation by thyroid hormone involves altered histone modifications.

Haddad F, Jiang W, Bodell PW, Qin AX, Baldwin KM.

Am J Physiol Heart Circ Physiol. 2010 Dec;299(6):H1968-80. doi: 10.1152/ajpheart.00644.2010. Epub 2010 Sep 10.

18.

Splitting of H3-H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange.

Katan-Khaykovich Y, Struhl K.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1296-301. doi: 10.1073/pnas.1018308108. Epub 2011 Jan 10.

19.

Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context.

Ha M, Hong S, Li WH.

Bioinformatics. 2013 May 1;29(9):1199-205. doi: 10.1093/bioinformatics/btt126. Epub 2013 Mar 19.

20.

Interplay between different epigenetic modifications and mechanisms.

Murr R.

Adv Genet. 2010;70:101-41. doi: 10.1016/B978-0-12-380866-0.60005-8. Review.

PMID:
20920747
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