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Complexity, temporal stability, and clinical correlates of airway bacterial community composition in primary ciliary dyskinesia.

Rogers GB, Carroll MP, Zain NM, Bruce KD, Lock K, Walker W, Jones G, Daniels TW, Lucas JS.

J Clin Microbiol. 2013 Dec;51(12):4029-35. doi: 10.1128/JCM.02164-13. Epub 2013 Sep 25.


Microbiome diversity in the bronchial tracts of patients with chronic obstructive pulmonary disease.

Cabrera-Rubio R, Garcia-Núñez M, Setó L, Antó JM, Moya A, Monsó E, Mira A.

J Clin Microbiol. 2012 Nov;50(11):3562-8. doi: 10.1128/JCM.00767-12. Epub 2012 Aug 22.


Clinical measures of disease in adult non-CF bronchiectasis correlate with airway microbiota composition.

Rogers GB, van der Gast CJ, Cuthbertson L, Thomson SK, Bruce KD, Martin ML, Serisier DJ.

Thorax. 2013 Aug;68(8):731-7. doi: 10.1136/thoraxjnl-2012-203105. Epub 2013 Apr 6.


Oral and airway microbiota in HIV-infected pneumonia patients.

Iwai S, Fei M, Huang D, Fong S, Subramanian A, Grieco K, Lynch SV, Huang L.

J Clin Microbiol. 2012 Sep;50(9):2995-3002. doi: 10.1128/JCM.00278-12. Epub 2012 Jul 3.


Analysis of culture-dependent versus culture-independent techniques for identification of bacteria in clinically obtained bronchoalveolar lavage fluid.

Dickson RP, Erb-Downward JR, Prescott HC, Martinez FJ, Curtis JL, Lama VN, Huffnagle GB.

J Clin Microbiol. 2014 Oct;52(10):3605-13. doi: 10.1128/JCM.01028-14. Epub 2014 Jul 30.


Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children.

Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP.

Appl Environ Microbiol. 2012 Sep;78(17):6262-70. doi: 10.1128/AEM.01051-12. Epub 2012 Jun 29.


Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals.

Bassis CM, Erb-Downward JR, Dickson RP, Freeman CM, Schmidt TM, Young VB, Beck JM, Curtis JL, Huffnagle GB.

MBio. 2015 Mar 3;6(2):e00037. doi: 10.1128/mBio.00037-15.


Comparison of bacterial community in aqueous and oil phases of water-flooded petroleum reservoirs using pyrosequencing and clone library approaches.

Wang LY, Ke WJ, Sun XB, Liu JF, Gu JD, Mu BZ.

Appl Microbiol Biotechnol. 2014 May;98(9):4209-21. doi: 10.1007/s00253-013-5472-y. Epub 2014 Jan 11.


The genus Prevotella in cystic fibrosis airways.

Field TR, Sibley CD, Parkins MD, Rabin HR, Surette MG.

Anaerobe. 2010 Aug;16(4):337-44. doi: 10.1016/j.anaerobe.2010.04.002. Epub 2010 Apr 20.


Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations.

Zemanick ET, Harris JK, Wagner BD, Robertson CE, Sagel SD, Stevens MJ, Accurso FJ, Laguna TA.

PLoS One. 2013 Apr 30;8(4):e62917. doi: 10.1371/journal.pone.0062917. Print 2013.


Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus.

Zhang L, Gowardman J, Morrison M, Krause L, Playford EG, Rickard CM.

Eur J Clin Microbiol Infect Dis. 2014 Jul;33(7):1189-98. doi: 10.1007/s10096-014-2058-2. Epub 2014 Feb 6.


Microbial population index and community structure in saline-alkaline soil using gene targeted metagenomics.

Keshri J, Mishra A, Jha B.

Microbiol Res. 2013 Mar 30;168(3):165-73. doi: 10.1016/j.micres.2012.09.005. Epub 2012 Oct 16.


The human urinary microbiome; bacterial DNA in voided urine of asymptomatic adults.

Lewis DA, Brown R, Williams J, White P, Jacobson SK, Marchesi JR, Drake MJ.

Front Cell Infect Microbiol. 2013 Aug 15;3:41. doi: 10.3389/fcimb.2013.00041. eCollection 2013.


Endotracheal tube biofilm inoculation of oral flora and subsequent colonization of opportunistic pathogens.

Perkins SD, Woeltje KF, Angenent LT.

Int J Med Microbiol. 2010 Nov;300(7):503-11. doi: 10.1016/j.ijmm.2010.02.005. Epub 2010 May 26.


Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables.

Jackson CR, Randolph KC, Osborn SL, Tyler HL.

BMC Microbiol. 2013 Dec 1;13:274. doi: 10.1186/1471-2180-13-274.


Can the freshwater bacterial communities shift to the "marine-like" taxa?

Zhang L, Gao G, Tang X, Shao K.

J Basic Microbiol. 2014 Nov;54(11):1264-72. doi: 10.1002/jobm.201300818. Epub 2014 Mar 31.


A longitudinal study of lung bacterial pathogens in patients with primary ciliary dyskinesia.

Alanin MC, Nielsen KG, von Buchwald C, Skov M, Aanaes K, Høiby N, Johansen HK.

Clin Microbiol Infect. 2015 Dec;21(12):1093.e1-7. doi: 10.1016/j.cmi.2015.08.020. Epub 2015 Sep 2.


Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis.

Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, Li C, Wei W, Liu J, Chen L, Davis C, Xu J.

BMC Oral Health. 2011 Dec 12;11:33. doi: 10.1186/1472-6831-11-33.


New microbiota found in sputum from patients with community-acquired pneumonia.

Chen C, Shen T, Tian F, Lin P, Li Q, Cui Z, Zhang Y, Xue M, Ye J, Guo X, Zhou Y.

Acta Biochim Biophys Sin (Shanghai). 2013 Dec;45(12):1039-48. doi: 10.1093/abbs/gmt116. Epub 2013 Oct 17.


Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements.

Kramer R, Sauer-Heilborn A, Welte T, Guzman CA, Abraham WR, Höfle MG.

J Clin Microbiol. 2015 Sep;53(9):2900-7. doi: 10.1128/JCM.01094-15. Epub 2015 Jul 1.

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