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Items: 1 to 20 of 114

1.

Rapid genotyping using pyrene-perylene locked nucleic acid complexes.

Kumar TS, Myznikova A, Samokhina E, Astakhova IK.

Artif DNA PNA XNA. 2013 Apr-Jun;4(2):58-68. doi: 10.4161/adna.25903.

2.

An efficient fluorescence resonance energy transfer (FRET) between pyrene and perylene assembled in a DNA duplex and its potential for discriminating single-base changes.

Kashida H, Takatsu T, Sekiguchi K, Asanuma H.

Chemistry. 2010 Feb 22;16(8):2479-86. doi: 10.1002/chem.200902078.

PMID:
20066689
3.

Pyrene-perylene as a FRET pair coupled to the N2'-functionality of 2'-amino-LNA.

Lindegaard D, Madsen AS, Astakhova IV, Malakhov AD, Babu BR, Korshun VA, Wengel J.

Bioorg Med Chem. 2008 Jan 1;16(1):94-9. Epub 2007 May 3.

PMID:
17920888
4.

Efficient energy transfer from pyrene to perylene assembled inside DNA duplex.

Kashida H, Takatsu T, Asanuma H.

Nucleic Acids Symp Ser (Oxf). 2009;(53):29-30. doi: 10.1093/nass/nrp015.

PMID:
19749244
5.

Novel (phenylethynyl)pyrene-LNA constructs for fluorescence SNP sensing in polymorphic nucleic acid targets.

Astakhova IK, Samokhina E, Babu BR, Wengel J.

Chembiochem. 2012 Jul 9;13(10):1509-19. doi: 10.1002/cbic.201200079. Epub 2012 Jun 14.

PMID:
22761036
6.

Branched DNA nanostructures efficiently stabilised and monitored by novel pyrene-perylene 2'-α-L-amino-LNA FRET pairs.

Astakhova IK, Kumar TS, Campbell MA, Ustinov AV, Korshun VA, Wengel J.

Chem Commun (Camb). 2013 Jan 18;49(5):511-3. doi: 10.1039/c2cc37547h.

PMID:
23201901
7.

Scaffolding along nucleic acid duplexes using 2'-amino-locked nucleic acids.

Astakhova IK, Wengel J.

Acc Chem Res. 2014 Jun 17;47(6):1768-77. doi: 10.1021/ar500014g. Epub 2014 Apr 21.

PMID:
24749544
8.
9.

Perylene attached to 2'-amino-LNA: synthesis, incorporation into oligonucleotides, and remarkable fluorescence properties in vitro and in cell culture.

Astakhova IV, Korshun VA, Jahn K, Kjems J, Wengel J.

Bioconjug Chem. 2008 Oct;19(10):1995-2007. doi: 10.1021/bc800202v. Epub 2008 Sep 5.

PMID:
18771303
10.

Accumulation of fluorophores into DNA duplexes to mimic the properties of quantum dots.

Kashida H, Sekiguchi K, Liang X, Asanuma H.

J Am Chem Soc. 2010 May 5;132(17):6223-30. doi: 10.1021/ja101007d.

PMID:
20380398
11.

Highly fluorescent conjugated pyrenes in nucleic acid probes: (phenylethynyl)pyrenecarbonyl-functionalized locked nucleic acids.

Astakhova IV, Korshun VA, Wengel J.

Chemistry. 2008;14(35):11010-26. doi: 10.1002/chem.200801077.

PMID:
18979465
12.

Single excitation three color folded DNA probe for SNP typing.

Joo HN, Seo YJ.

Bioorg Med Chem Lett. 2015 Nov 15;25(22):5286-90. doi: 10.1016/j.bmcl.2015.09.043. Epub 2015 Sep 21.

PMID:
26453008
13.

Development of a robust model system of FRET using base surrogates tethering fluorophores for strict control of their position and orientation within DNA duplex.

Kato T, Kashida H, Kishida H, Yada H, Okamoto H, Asanuma H.

J Am Chem Soc. 2013 Jan 16;135(2):741-50. doi: 10.1021/ja309279w. Epub 2013 Jan 8.

PMID:
23240980
14.
15.

SNP detection in mRNA in living cells using allele specific FRET probes.

Dahan L, Huang L, Kedmi R, Behlke MA, Peer D.

PLoS One. 2013 Sep 9;8(9):e72389. doi: 10.1371/journal.pone.0072389. eCollection 2013. Erratum in: PLoS One. 2013;8(11). doi:10.1371/annotation/d41768c5-b58a-4355-ad17-166f70e347b8.

16.

Preparation of supramolecular chromophoric assemblies using a DNA duplex.

Kashida H, Asanuma H.

Phys Chem Chem Phys. 2012 May 28;14(20):7196-204. doi: 10.1039/c2cp40520b. Epub 2012 Apr 24.

PMID:
22532160
17.

Recognition of Double-Stranded DNA Using Energetically Activated Duplexes Modified with N2'-Pyrene-, Perylene-, or Coronene-Functionalized 2'-N-Methyl-2'-amino-DNA Monomers.

Anderson BA, Onley JJ, Hrdlicka PJ.

J Org Chem. 2015 Jun 5;80(11):5395-406. doi: 10.1021/acs.joc.5b00742. Epub 2015 May 22.

PMID:
25984765
18.

Multilabeled pyrene-functionalized 2'-amino-LNA probes for nucleic acid detection in homogeneous fluorescence assays.

Hrdlicka PJ, Babu BR, Sørensen MD, Harrit N, Wengel J.

J Am Chem Soc. 2005 Sep 28;127(38):13293-9.

PMID:
16173760
19.

Sensitive SNP dual-probe assays based on pyrene-functionalized 2'-amino-LNA: lessons to be learned.

Umemoto T, Hrdlicka PJ, Babu BR, Wengel J.

Chembiochem. 2007 Dec 17;8(18):2240-8.

PMID:
17979173
20.

5'-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure.

Kostenko E, Dobrikov M, Pyshnyi D, Petyuk V, Komarova N, Vlassov V, Zenkova M.

Nucleic Acids Res. 2001 Sep 1;29(17):3611-20.

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