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Items: 1 to 20 of 112

1.

Topology of molecular interaction networks.

Winterbach W, Van Mieghem P, Reinders M, Wang H, de Ridder D.

BMC Syst Biol. 2013 Sep 16;7:90. doi: 10.1186/1752-0509-7-90. Review.

2.

Use of systems biology to decipher host-pathogen interaction networks and predict biomarkers.

Dix A, Vlaic S, Guthke R, Linde J.

Clin Microbiol Infect. 2016 Jul;22(7):600-6. doi: 10.1016/j.cmi.2016.04.014. Epub 2016 Apr 22. Review.

3.

Computing paths and cycles in biological interaction graphs.

Klamt S, von Kamp A.

BMC Bioinformatics. 2009 Jun 15;10:181. doi: 10.1186/1471-2105-10-181.

4.

Dynamic and structural constraints in signal propagation by regulatory networks.

Estrada J, Guantes R.

Mol Biosyst. 2013 Feb 2;9(2):268-84. doi: 10.1039/c2mb25243k. Epub 2012 Dec 6.

PMID:
23224050
5.

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313. doi: 10.1186/1471-2164-9-313.

6.

Targeting and tinkering with interaction networks.

Russell RB, Aloy P.

Nat Chem Biol. 2008 Nov;4(11):666-73. doi: 10.1038/nchembio.119. Review.

PMID:
18936751
7.

New Markov-Shannon Entropy models to assess connectivity quality in complex networks: from molecular to cellular pathway, Parasite-Host, Neural, Industry, and Legal-Social networks.

Riera-Fernández P, Munteanu CR, Escobar M, Prado-Prado F, Martín-Romalde R, Pereira D, Villalba K, Duardo-Sánchez A, González-Díaz H.

J Theor Biol. 2012 Jan 21;293:174-88. doi: 10.1016/j.jtbi.2011.10.016. Epub 2011 Oct 25.

PMID:
22037044
8.

Dynamic modeling and analysis of cancer cellular network motifs.

Cloutier M, Wang E.

Integr Biol (Camb). 2011 Jul;3(7):724-32. doi: 10.1039/c0ib00145g. Epub 2011 Jun 15. Review.

PMID:
21674097
9.

Biological impacts and context of network theory.

Almaas E.

J Exp Biol. 2007 May;210(Pt 9):1548-58. Review.

10.

Genome-scale metabolic networks.

Terzer M, Maynard ND, Covert MW, Stelling J.

Wiley Interdiscip Rev Syst Biol Med. 2009 Nov-Dec;1(3):285-97. doi: 10.1002/wsbm.37. Review.

PMID:
20835998
11.

Using the topology of metabolic networks to predict viability of mutant strains.

Wunderlich Z, Mirny LA.

Biophys J. 2006 Sep 15;91(6):2304-11. Epub 2006 Jun 16.

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Robustness and adaptation reveal plausible cell cycle controlling subnetwork in Saccharomyces cerevisiae.

Huang JY, Huang CW, Kao KC, Lai PY.

Gene. 2013 Apr 10;518(1):35-41. doi: 10.1016/j.gene.2012.11.088. Epub 2012 Dec 27.

PMID:
23274654
15.

Novel recurrent neural network for modelling biological networks: oscillatory p53 interaction dynamics.

Ling H, Samarasinghe S, Kulasiri D.

Biosystems. 2013 Dec;114(3):191-205. doi: 10.1016/j.biosystems.2013.08.004. Epub 2013 Sep 5.

PMID:
24012741
16.

Modeling and analyzing complex biological networks incooperating experimental information on both network topology and stable states.

Zou YM.

Bioinformatics. 2010 Aug 15;26(16):2037-41. doi: 10.1093/bioinformatics/btq333. Epub 2010 Jul 2.

PMID:
20601441
17.

Conservation and topology of protein interaction networks under duplication-divergence evolution.

Evlampiev K, Isambert H.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. doi: 10.1073/pnas.0804119105. Epub 2008 Jul 16.

18.

Making the right connections: biological networks in the light of evolution.

Knight CG, Pinney JW.

Bioessays. 2009 Oct;31(10):1080-90. doi: 10.1002/bies.200900043.

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20.

Network legos: building blocks of cellular wiring diagrams.

Murali TM, Rivera CG.

J Comput Biol. 2008 Sep;15(7):829-44. doi: 10.1089/cmb.2007.0139.

PMID:
18707557

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