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Transcript assembly and quantification by RNA-Seq reveals differentially expressed genes between soft-endocarp and hard-endocarp hawthorns.

Dai H, Han G, Yan Y, Zhang F, Liu Z, Li X, Li W, Ma Y, Li H, Liu Y, Zhang Z.

PLoS One. 2013 Sep 5;8(9):e72910. doi: 10.1371/journal.pone.0072910. eCollection 2013.


Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca.

Zhang Y, Li W, Dou Y, Zhang J, Jiang G, Miao L, Han G, Liu Y, Li H, Zhang Z.

PLoS One. 2015 Dec 4;10(12):e0144356. doi: 10.1371/journal.pone.0144356. eCollection 2015.


De novo transcriptome assembly and quantification reveal differentially expressed genes between soft-seed and hard-seed pomegranate (Punica granatum L.).

Xue H, Cao S, Li H, Zhang J, Niu J, Chen L, Zhang F, Zhao D.

PLoS One. 2017 Jun 8;12(6):e0178809. doi: 10.1371/journal.pone.0178809. eCollection 2017.


Stone formation in peach fruit exhibits spatial coordination of the lignin and flavonoid pathways and similarity to Arabidopsis dehiscence.

Dardick CD, Callahan AM, Chiozzotto R, Schaffer RJ, Piagnani MC, Scorza R.

BMC Biol. 2010 Feb 9;8:13. doi: 10.1186/1741-7007-8-13.


De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers.

Yan X, Zhang X, Lu M, He Y, An H.

Gene. 2015 Apr 25;561(1):54-62. doi: 10.1016/j.gene.2015.02.054. Epub 2015 Feb 19.


Comparative transcriptome profiling and morphology provide insights into endocarp cleaving of apricot cultivar (Prunus armeniaca L.).

Zhang X, Zhang L, Zhang Q, Xu J, Liu W, Dong W.

BMC Plant Biol. 2017 Apr 11;17(1):72. doi: 10.1186/s12870-017-1023-5.


Characterization of transcriptome dynamics during watermelon fruit development: sequencing, assembly, annotation and gene expression profiles.

Guo S, Liu J, Zheng Y, Huang M, Zhang H, Gong G, He H, Ren Y, Zhong S, Fei Z, Xu Y.

BMC Genomics. 2011 Sep 21;12:454. doi: 10.1186/1471-2164-12-454.


Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq.

Chen J, Chen B, Zhang D.

BMC Genomics. 2015 Mar 10;16:164. doi: 10.1186/s12864-015-1390-y.


Transcriptomic Analysis of Paeonia delavayi Wild Population Flowers to Identify Differentially Expressed Genes Involved in Purple-Red and Yellow Petal Pigmentation.

Shi Q, Zhou L, Wang Y, Li K, Zheng B, Miao K.

PLoS One. 2015 Aug 12;10(8):e0135038. doi: 10.1371/journal.pone.0135038. eCollection 2015.


Berry skin development in Norton grape: distinct patterns of transcriptional regulation and flavonoid biosynthesis.

Ali MB, Howard S, Chen S, Wang Y, Yu O, Kovacs LG, Qiu W.

BMC Plant Biol. 2011 Jan 10;11:7. doi: 10.1186/1471-2229-11-7.


Comparative transcripts profiling of fruit mesocarp and endocarp relevant to secondary metabolism by suppression subtractive hybridization in Azadirachta indica (neem).

Narnoliya LK, Rajakani R, Sangwan NS, Gupta V, Sangwan RS.

Mol Biol Rep. 2014 May;41(5):3147-62. doi: 10.1007/s11033-014-3174-x. Epub 2014 Jan 30.


Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture.

Md-Mustafa ND, Khalid N, Gao H, Peng Z, Alimin MF, Bujang N, Ming WS, Mohd-Yusuf Y, Harikrishna JA, Othman RY.

BMC Genomics. 2014 Nov 18;15:984. doi: 10.1186/1471-2164-15-984.


Sequence diversity and differential expression of major phenylpropanoid-flavonoid biosynthetic genes among three mango varieties.

Hoang VL, Innes DJ, Shaw PN, Monteith GR, Gidley MJ, Dietzgen RG.

BMC Genomics. 2015 Jul 30;16:561. doi: 10.1186/s12864-015-1784-x.


Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.

Shi CY, Yang H, Wei CL, Yu O, Zhang ZZ, Jiang CJ, Sun J, Li YY, Chen Q, Xia T, Wan XC.

BMC Genomics. 2011 Feb 28;12:131. doi: 10.1186/1471-2164-12-131.


Generation and analysis of ESTs from strawberry (Fragaria xananassa) fruits and evaluation of their utility in genetic and molecular studies.

Bombarely A, Merchante C, Csukasi F, Cruz-Rus E, Caballero JL, Medina-Escobar N, Blanco-Portales R, Botella MA, Muñoz-Blanco J, Sánchez-Sevilla JF, Valpuesta V.

BMC Genomics. 2010 Sep 17;11:503. doi: 10.1186/1471-2164-11-503.


Genome Sequences of Three Apple chlorotic leaf spot virus Isolates from Hawthorns in China.

Guo W, Zheng W, Wang M, Li X, Ma Y, Dai H.

PLoS One. 2016 Aug 12;11(8):e0161099. doi: 10.1371/journal.pone.0161099. eCollection 2016.

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