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Items: 1 to 20 of 96

1.

Chromatin looping and organization at developmentally regulated gene loci.

Noordermeer D, Duboule D.

Wiley Interdiscip Rev Dev Biol. 2013 Sep-Oct;2(5):615-30. doi: 10.1002/wdev.103. Epub 2013 Jan 3. Review.

PMID:
24014450
2.

Chromatin looping and eRNA transcription precede the transcriptional activation of gene in the β-globin locus.

Kim YW, Lee S, Yun J, Kim A.

Biosci Rep. 2015 Mar 18;35(2). pii: e00179. doi: 10.1042/BSR20140126.

3.

Chromatin boundary elements organize genomic architecture and developmental gene regulation in Drosophila Hox clusters.

Ma Z, Li M, Roy S, Liu KJ, Romine ML, Lane DC, Patel SK, Cai HN.

World J Biol Chem. 2016 Aug 26;7(3):223-30. doi: 10.4331/wjbc.v7.i3.223. Review.

4.

Constraints contributed by chromatin looping limit recombination targeting during Ig class switch recombination.

Feldman S, Achour I, Wuerffel R, Kumar S, Gerasimova T, Sen R, Kenter AL.

J Immunol. 2015 Mar 1;194(5):2380-9. doi: 10.4049/jimmunol.1401170. Epub 2015 Jan 26.

5.

Influence of a CTCF-Dependent Insulator on Multiple Aspects of Enhancer-Mediated Chromatin Organization.

Varma G, Rawat P, Jalan M, Vinayak M, Srivastava M.

Mol Cell Biol. 2015 Oct;35(20):3504-16. doi: 10.1128/MCB.00514-15. Epub 2015 Aug 3.

6.

Surviving an identity crisis: a revised view of chromatin insulators in the genomics era.

Matzat LH, Lei EP.

Biochim Biophys Acta. 2014 Mar;1839(3):203-14. doi: 10.1016/j.bbagrm.2013.10.007. Epub 2013 Nov 1. Review.

7.

Diffusion-driven looping provides a consistent framework for chromatin organization.

Bohn M, Heermann DW.

PLoS One. 2010 Aug 25;5(8):e12218. doi: 10.1371/journal.pone.0012218.

8.

Looping mediated interaction between the promoter and 3' UTR regulates type II collagen expression in chondrocytes.

Jash A, Yun K, Sahoo A, So JS, Im SH.

PLoS One. 2012;7(7):e40828. doi: 10.1371/journal.pone.0040828. Epub 2012 Jul 16.

9.

Chromatin loops as allosteric modulators of enhancer-promoter interactions.

Doyle B, Fudenberg G, Imakaev M, Mirny LA.

PLoS Comput Biol. 2014 Oct 23;10(10):e1003867. doi: 10.1371/journal.pcbi.1003867. eCollection 2014 Oct.

10.

Practical Analysis of Genome Contact Interaction Experiments.

Carty MA, Elemento O.

Methods Mol Biol. 2016;1418:177-89. doi: 10.1007/978-1-4939-3578-9_9.

PMID:
27008015
11.

Can chromatin conformation technologies bring light into human molecular pathology?

Kubiak M, Lewandowska MA.

Acta Biochim Pol. 2015;62(3):483-9. doi: 10.18388/abp.2015_984. Epub 2015 Sep 2. Review.

12.

Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction: insight into chromatin folding by polymer modelling.

Tark-Dame M, Jerabek H, Manders EM, van der Wateren IM, Heermann DW, van Driel R.

PLoS Comput Biol. 2014 Oct 9;10(10):e1003877. doi: 10.1371/journal.pcbi.1003877. eCollection 2014 Oct. Erratum in: PLoS Comput Biol. 2016 Jan;12(1):e1004716. van der Wateren, Ingrid M [added].

13.

Close encounters of the 3C kind: long-range chromatin interactions and transcriptional regulation.

Palstra RJ.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):297-309. doi: 10.1093/bfgp/elp016. Epub 2009 Jun 17. Review.

PMID:
19535505
14.

Organizing the genome: enhancers and insulators.

Zhao H, Dean A.

Biochem Cell Biol. 2005 Aug;83(4):516-24. Review.

PMID:
16094455
15.

Constitutive promoter occupancy by the MBF-1 activator and chromatin modification of the developmental regulated sea urchin alpha-H2A histone gene.

Di Caro V, Cavalieri V, Melfi R, Spinelli G.

J Mol Biol. 2007 Feb 2;365(5):1285-97. Epub 2006 Nov 3.

PMID:
17134720
16.

A spectrum of gene regulatory phenomena at mammalian beta-globin gene loci.

Fromm G, Bulger M.

Biochem Cell Biol. 2009 Oct;87(5):781-90. doi: 10.1139/O09-048. Review.

PMID:
19898527
17.

Chromatin loops in gene regulation.

Kadauke S, Blobel GA.

Biochim Biophys Acta. 2009 Jan;1789(1):17-25. doi: 10.1016/j.bbagrm.2008.07.002. Epub 2008 Jul 15. Review.

18.

Gene activation and deactivation related changes in the three-dimensional structure of chromatin.

Wegel E, Shaw P.

Chromosoma. 2005 Nov;114(5):331-7. Epub 2005 Nov 12. Review.

PMID:
16075283
19.

Minor Loops in Major Folds: Enhancer-Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease.

Matharu N, Ahituv N.

PLoS Genet. 2015 Dec 3;11(12):e1005640. doi: 10.1371/journal.pgen.1005640. eCollection 2015 Dec. Review.

20.

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development.

Thomas S, Li XY, Sabo PJ, Sandstrom R, Thurman RE, Canfield TK, Giste E, Fisher W, Hammonds A, Celniker SE, Biggin MD, Stamatoyannopoulos JA.

Genome Biol. 2011;12(5):R43. doi: 10.1186/gb-2011-12-5-r43. Epub 2011 May 11.

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