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Items: 1 to 20 of 86


What has high-throughput sequencing ever done for us?

Parkhill J.

Nat Rev Microbiol. 2013 Oct;11(10):664-5. doi: 10.1038/nrmicro3112. Epub 2013 Aug 27.


Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.

McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS.

Genome Res. 2013 May;23(5):867-77. doi: 10.1101/gr.150433.112. Epub 2013 Apr 5.


Oral bacterial genome sequencing using the high-throughput Roche Genome Sequencer FLX System.

Heng NC, Stanton JA.

Methods Mol Biol. 2010;666:197-218. doi: 10.1007/978-1-60761-820-1_14.


Microbial genomics. TIGR begins assault on the anthrax genome.

Enserink M.

Science. 2002 Feb 22;295(5559):1442-3. No abstract available.


Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years.

Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, Sahl J, Wagner DM.

EBioMedicine. 2015 Oct 6;2(11):1613-8. doi: 10.1016/j.ebiom.2015.10.004. eCollection 2015 Nov.


High-throughput sequencing of Bacillus anthracis in France: investigating genome diversity and population structure using whole-genome SNP discovery.

Girault G, Blouin Y, Vergnaud G, Derzelle S.

BMC Genomics. 2014 Apr 16;15:288. doi: 10.1186/1471-2164-15-288.


High-throughput bacterial functional genomics in the sequencing era.

Gray AN, Koo BM, Shiver AL, Peters JM, Osadnik H, Gross CA.

Curr Opin Microbiol. 2015 Oct;27:86-95. doi: 10.1016/j.mib.2015.07.012. Epub 2015 Sep 1. Review.


Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis.

Read TD, Salzberg SL, Pop M, Shumway M, Umayam L, Jiang L, Holtzapple E, Busch JD, Smith KL, Schupp JM, Solomon D, Keim P, Fraser CM.

Science. 2002 Jun 14;296(5575):2028-33. Epub 2002 May 9.


Detection of Bacillus anthracis DNA in complex soil and air samples using next-generation sequencing.

Be NA, Thissen JB, Gardner SN, McLoughlin KS, Fofanov VY, Koshinsky H, Ellingson SR, Brettin TS, Jackson PJ, Jaing CJ.

PLoS One. 2013 Sep 9;8(9):e73455. doi: 10.1371/journal.pone.0073455. eCollection 2013.


Pathoscope: species identification and strain attribution with unassembled sequencing data.

Francis OE, Bendall M, Manimaran S, Hong C, Clement NL, Castro-Nallar E, Snell Q, Schaalje GB, Clement MJ, Crandall KA, Johnson WE.

Genome Res. 2013 Oct;23(10):1721-9. doi: 10.1101/gr.150151.112. Epub 2013 Jul 10.


Next-generation sequencing technologies and their impact on microbial genomics.

Forde BM, O'Toole PW.

Brief Funct Genomics. 2013 Sep;12(5):440-53. doi: 10.1093/bfgp/els062. Epub 2013 Jan 11. Review.


Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation.

Rasko DA, Worsham PL, Abshire TG, Stanley ST, Bannan JD, Wilson MR, Langham RJ, Decker RS, Jiang L, Read TD, Phillippy AM, Salzberg SL, Pop M, Van Ert MN, Kenefic LJ, Keim PS, Fraser-Liggett CM, Ravel J.

Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):5027-32. doi: 10.1073/pnas.1016657108. Epub 2011 Mar 7.


Microarray-based resequencing of multiple Bacillus anthracis isolates.

Zwick ME, Mcafee F, Cutler DJ, Read TD, Ravel J, Bowman GR, Galloway DR, Mateczun A.

Genome Biol. 2005;6(1):R10. Epub 2004 Dec 17.


Sherlock Genomes - viral investigator.

Smith SE, Wash RS.

Nat Rev Microbiol. 2013 Mar;11(3):150. doi: 10.1038/nrmicro2979.


Genomics and microbiology. Microbial forensics--"cross-examining pathogens".

Cummings CA, Relman DA.

Science. 2002 Jun 14;296(5575):1976-9. Epub 2002 May 9. No abstract available.


Deep sequencing of Porphyromonas gingivalis and comparative transcriptome analysis of a LuxS mutant.

Hirano T, Beck DA, Demuth DR, Hackett M, Lamont RJ.

Front Cell Infect Microbiol. 2012 Jun 12;2:79. doi: 10.3389/fcimb.2012.00079. eCollection 2012.


Outbreak investigation using high-throughput genome sequencing within a diagnostic microbiology laboratory.

Sherry NL, Porter JL, Seemann T, Watkins A, Stinear TP, Howden BP.

J Clin Microbiol. 2013 May;51(5):1396-401. doi: 10.1128/JCM.03332-12. Epub 2013 Feb 13.


Biology and taxonomy of Bacillus cereus, Bacillus anthracis, and Bacillus thuringiensis.

Vilas-Bôas GT, Peruca AP, Arantes OM.

Can J Microbiol. 2007 Jun;53(6):673-87. Review.


Molecular diversity of Bacillus anthracis in the Netherlands: investigating the relationship to the worldwide population using whole-genome SNP discovery.

Derzelle S, Girault G, Roest HI, Koene M.

Infect Genet Evol. 2015 Jun;32:370-6. doi: 10.1016/j.meegid.2015.03.030. Epub 2015 Apr 2.

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