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Items: 1 to 20 of 136

3.

PROTON GRADIENT REGULATION 3 recognizes multiple targets with limited similarity and mediates translation and RNA stabilization in plastids.

Cai W, Okuda K, Peng L, Shikanai T.

Plant J. 2011 Jul;67(2):318-27. doi: 10.1111/j.1365-313X.2011.04593.x.

4.

Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein.

Kobayashi K, Kawabata M, Hisano K, Kazama T, Matsuoka K, Sugita M, Nakamura T.

Nucleic Acids Res. 2012 Mar;40(6):2712-23. doi: 10.1093/nar/gkr1084.

5.

Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants.

Yagi Y, Hayashi S, Kobayashi K, Hirayama T, Nakamura T.

PLoS One. 2013;8(3):e57286. doi: 10.1371/journal.pone.0057286.

6.

Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants.

Nakamura T, Yagi Y, Kobayashi K.

Plant Cell Physiol. 2012 Jul;53(7):1171-9. doi: 10.1093/pcp/pcs069. Review.

PMID:
22576772
7.

Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition.

Ban T, Ke J, Chen R, Gu X, Tan MH, Zhou XE, Kang Y, Melcher K, Zhu JK, Xu HE.

J Biol Chem. 2013 Nov 1;288(44):31540-8. doi: 10.1074/jbc.M113.496828.

8.

Functional analysis of the Arabidopsis thaliana CHLOROPLAST BIOGENESIS 19 pentatricopeptide repeat editing protein.

Ramos-Vega M, Guevara-García A, Llamas E, Sánchez-León N, Olmedo-Monfil V, Vielle-Calzada JP, León P.

New Phytol. 2015 Oct;208(2):430-41. doi: 10.1111/nph.13468.

9.

Improved computational target site prediction for pentatricopeptide repeat RNA editing factors.

Takenaka M, Zehrmann A, Brennicke A, Graichen K.

PLoS One. 2013 Jun 6;8(6):e65343. doi: 10.1371/journal.pone.0065343.

10.

Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs.

Imai T, Nakamura T, Maeda T, Nakayama K, Gao X, Nakashima T, Kakuta Y, Kimura M.

Biochem Biophys Res Commun. 2014 Aug 8;450(4):1541-6. doi: 10.1016/j.bbrc.2014.07.030.

PMID:
25034328
11.

PPR proteins network as site-specific RNA editing factors in plant organelles.

Zehrmann A, Verbitskiy D, Härtel B, Brennicke A, Takenaka M.

RNA Biol. 2011 Jan-Feb;8(1):67-70.

PMID:
21289490
12.

Chloroplast RNA-binding and pentatricopeptide repeat proteins.

Nakamura T, Schuster G, Sugiura M, Sugita M.

Biochem Soc Trans. 2004 Aug;32(Pt 4):571-4.

PMID:
15270678
13.

Predictable alteration of sequence recognition by RNA editing factors from Arabidopsis.

Kindgren P, Yap A, Bond CS, Small I.

Plant Cell. 2015 Feb;27(2):403-16. doi: 10.1105/tpc.114.134189.

14.

Pentatricopeptide repeat proteins involved in plant organellar RNA editing.

Yagi Y, Tachikawa M, Noguchi H, Satoh S, Obokata J, Nakamura T.

RNA Biol. 2013;10(9):1419-25. doi: 10.4161/rna.24908.

15.

Pentatricopeptide repeat proteins in plants.

Barkan A, Small I.

Annu Rev Plant Biol. 2014;65:415-42. doi: 10.1146/annurev-arplant-050213-040159. Review.

PMID:
24471833
16.

Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids.

Boussardon C, Salone V, Avon A, Berthomé R, Hammani K, Okuda K, Shikanai T, Small I, Lurin C.

Plant Cell. 2012 Sep;24(9):3684-94. doi: 10.1105/tpc.112.099507.

17.
18.

The design and structural characterization of a synthetic pentatricopeptide repeat protein.

Gully BS, Shah KR, Lee M, Shearston K, Smith NM, Sadowska A, Blythe AJ, Bernath-Levin K, Stanley WA, Small ID, Bond CS.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):196-208. doi: 10.1107/S1399004714024869.

PMID:
25664731
19.
20.

A conserved glutamate residue in the C-terminal deaminase domain of pentatricopeptide repeat proteins is required for RNA editing activity.

Hayes ML, Dang KN, Diaz MF, Mulligan RM.

J Biol Chem. 2015 Apr 17;290(16):10136-42. doi: 10.1074/jbc.M114.631630.

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