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Items: 1 to 20 of 62

1.

Human expression QTLs are enriched in signals of environmental adaptation.

Ye K, Lu J, Raj SM, Gu Z.

Genome Biol Evol. 2013;5(9):1689-701. doi: 10.1093/gbe/evt124.

2.

Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs).

Handelman SK, Seweryn M, Smith RM, Hartmann K, Wang D, Pietrzak M, Johnson AD, Kloczkowski A, Sadee W.

BMC Genomics. 2015;16 Suppl 8:S8. doi: 10.1186/1471-2164-16-S8-S8. Epub 2015 Jun 18.

3.

Mapping of hepatic expression quantitative trait loci (eQTLs) in a Han Chinese population.

Wang X, Tang H, Teng M, Li Z, Li J, Fan J, Zhong L, Sun X, Xu J, Chen G, Chen D, Wang Z, Xing T, Zhang J, Huang L, Wang S, Peng X, Qin S, Shi Y, Peng Z.

J Med Genet. 2014 May;51(5):319-26. doi: 10.1136/jmedgenet-2013-102045. Epub 2014 Mar 24.

4.

Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs.

Zhang X, Gierman HJ, Levy D, Plump A, Dobrin R, Goring HH, Curran JE, Johnson MP, Blangero J, Kim SK, O'Donnell CJ, Emilsson V, Johnson AD.

BMC Genomics. 2014 Jun 27;15:532. doi: 10.1186/1471-2164-15-532.

5.

Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci†.

Kirsten H, Al-Hasani H, Holdt L, Gross A, Beutner F, Krohn K, Horn K, Ahnert P, Burkhardt R, Reiche K, Hackermüller J, Löffler M, Teupser D, Thiery J, Scholz M.

Hum Mol Genet. 2015 Aug 15;24(16):4746-63. doi: 10.1093/hmg/ddv194. Epub 2015 May 27.

6.

Sequence polymorphisms cause many false cis eQTLs.

Alberts R, Terpstra P, Li Y, Breitling R, Nap JP, Jansen RC.

PLoS One. 2007 Jul 18;2(7):e622.

7.

Expression quantitative trait Loci acting across multiple tissues are enriched in inherited risk for coronary artery disease.

Foroughi Asl H, Talukdar HA, Kindt AS, Jain RK, Ermel R, Ruusalepp A, Nguyen KD, Dobrin R, Reilly DF, Schunkert H, Samani NJ, Braenne I, Erdmann J, Melander O, Qi J, Ivert T, Skogsberg J, Schadt EE, Michoel T, Björkegren JL; CARDIoGRAM Consortium.

Circ Cardiovasc Genet. 2015 Apr;8(2):305-15. doi: 10.1161/CIRCGENETICS.114.000640. Epub 2015 Jan 11.

8.

Chemotherapeutic drug susceptibility associated SNPs are enriched in expression quantitative trait loci.

Gamazon ER, Huang RS, Cox NJ, Dolan ME.

Proc Natl Acad Sci U S A. 2010 May 18;107(20):9287-92. doi: 10.1073/pnas.1001827107. Epub 2010 May 4.

9.

Signatures of environmental genetic adaptation pinpoint pathogens as the main selective pressure through human evolution.

Fumagalli M, Sironi M, Pozzoli U, Ferrer-Admetlla A, Pattini L, Nielsen R.

PLoS Genet. 2011 Nov;7(11):e1002355. doi: 10.1371/journal.pgen.1002355. Epub 2011 Nov 3. Erratum in: PLoS Genet. 2011 Nov;7(11). doi:10.1371/annotation/ca428083-dbcb-476a-956c-d7bb6e317cf7. Ferrer-Admettla, Anna [corrected to Ferrer-Admetlla, Anna].

10.

Genetics of human gene expression.

Stranger BE, Raj T.

Curr Opin Genet Dev. 2013 Dec;23(6):627-34. doi: 10.1016/j.gde.2013.10.004. Epub 2013 Nov 14. Review.

PMID:
24238872
11.

A global analysis of QTLs for expression variations in rice shoots at the early seedling stage.

Wang J, Yu H, Xie W, Xing Y, Yu S, Xu C, Li X, Xiao J, Zhang Q.

Plant J. 2010 Sep;63(6):1063-74. doi: 10.1111/j.1365-313X.2010.04303.x.

12.

Signatures of Evolutionary Adaptation in Quantitative Trait Loci Influencing Trace Element Homeostasis in Liver.

Engelken J, Espadas G, Mancuso FM, Bonet N, Scherr AL, Jímenez-Álvarez V, Codina-Solà M, Medina-Stacey D, Spataro N, Stoneking M, Calafell F, Sabidó E, Bosch E.

Mol Biol Evol. 2016 Mar;33(3):738-54. doi: 10.1093/molbev/msv267. Epub 2015 Nov 17.

13.

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7.

14.

Are adaptive loci transferable across genomes of related species? Outlier and environmental association analyses in Alpine Brassicaceae species.

Zulliger D, Schnyder E, Gugerli F.

Mol Ecol. 2013 Mar;22(6):1626-39. doi: 10.1111/mec.12199. Epub 2013 Feb 8.

PMID:
23398479
15.

Refining susceptibility loci of chronic obstructive pulmonary disease with lung eqtls.

Lamontagne M, Couture C, Postma DS, Timens W, Sin DD, Paré PD, Hogg JC, Nickle D, Laviolette M, Bossé Y.

PLoS One. 2013 Jul 30;8(7):e70220. doi: 10.1371/journal.pone.0070220. Print 2013.

16.

Cross-tissue and tissue-specific eQTLs: partitioning the heritability of a complex trait.

Torres JM, Gamazon ER, Parra EJ, Below JE, Valladares-Salgado A, Wacher N, Cruz M, Hanis CL, Cox NJ.

Am J Hum Genet. 2014 Nov 6;95(5):521-34. doi: 10.1016/j.ajhg.2014.10.001. Epub 2014 Oct 30.

17.

MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs.

Liu C, Zhang F, Li T, Lu M, Wang L, Yue W, Zhang D.

BMC Genomics. 2012 Nov 23;13:661. doi: 10.1186/1471-2164-13-661.

18.

Local adaptation in the flowering-time gene network of balsam poplar, Populus balsamifera L.

Keller SR, Levsen N, Olson MS, Tiffin P.

Mol Biol Evol. 2012 Oct;29(10):3143-52. Epub 2012 Apr 18.

PMID:
22513286
19.

Relationship of common expression quantitative trait loci genes to the immune system.

Li J, Wang L, Li H, Zhang R, Li X, Guo M.

Genet Mol Res. 2013 Dec 11;12(4):6546-53. doi: 10.4238/2013.December.11.6.

20.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

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