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Items: 1 to 20 of 131

1.

RCircos: an R package for Circos 2D track plots.

Zhang H, Meltzer P, Davis S.

BMC Bioinformatics. 2013 Aug 10;14:244. doi: 10.1186/1471-2105-14-244.

2.

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data.

Naquin D, d'Aubenton-Carafa Y, Thermes C, Silvain M.

BMC Bioinformatics. 2014 Jun 18;15:198. doi: 10.1186/1471-2105-15-198.

3.

Circos: an information aesthetic for comparative genomics.

Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA.

Genome Res. 2009 Sep;19(9):1639-45. doi: 10.1101/gr.092759.109. Epub 2009 Jun 18.

4.

J-Circos: an interactive Circos plotter.

An J, Lai J, Sajjanhar A, Batra J, Wang C, Nelson CC.

Bioinformatics. 2015 May 1;31(9):1463-5. doi: 10.1093/bioinformatics/btu842. Epub 2014 Dec 24.

PMID:
25540184
5.

ggbio: an R package for extending the grammar of graphics for genomic data.

Yin T, Cook D, Lawrence M.

Genome Biol. 2012 Aug 31;13(8):R77. doi: 10.1186/gb-2012-13-8-r77.

6.

gtrellis: an R/Bioconductor package for making genome-level Trellis graphics.

Gu Z, Eils R, Schlesner M.

BMC Bioinformatics. 2016 Apr 18;17:169. doi: 10.1186/s12859-016-1051-4.

7.

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data.

Hu Y, Yan C, Hsu CH, Chen QR, Niu K, Komatsoulis GA, Meerzaman D.

Cancer Inform. 2014 Jan 16;13:13-20. doi: 10.4137/CIN.S13495. eCollection 2014.

8.

caOmicsV: an R package for visualizing multidimensional cancer genomic data.

Zhang H, Meltzer PS, Davis SR.

BMC Bioinformatics. 2016 Mar 22;17:141. doi: 10.1186/s12859-016-0989-6.

9.

circlize Implements and enhances circular visualization in R.

Gu Z, Gu L, Eils R, Schlesner M, Brors B.

Bioinformatics. 2014 Oct;30(19):2811-2. doi: 10.1093/bioinformatics/btu393. Epub 2014 Jun 14.

PMID:
24930139
10.

visPIG--a web tool for producing multi-region, multi-track, multi-scale plots of genetic data.

Scales M, Jäger R, Migliorini G, Houlston RS, Henrion MY.

PLoS One. 2014 Sep 10;9(9):e107497. doi: 10.1371/journal.pone.0107497. eCollection 2014.

11.

plethy: management of whole body plethysmography data in R.

Bottomly D, Wilmot B, McWeeney SK.

BMC Bioinformatics. 2015 Apr 29;16:134. doi: 10.1186/s12859-015-0547-7.

12.

Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.

Hon J, Martínek T, Rajdl K, Lexa M.

Bioinformatics. 2013 Aug 1;29(15):1900-1. doi: 10.1093/bioinformatics/btt299. Epub 2013 May 24.

PMID:
23709494
13.

snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package.

Luna A, Nicodemus KK.

Bioinformatics. 2007 Mar 15;23(6):774-6. Epub 2007 Jan 18.

PMID:
17234637
14.

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

González-Beltrán A, Neumann S, Maguire E, Sansone SA, Rocca-Serra P.

BMC Bioinformatics. 2014;15 Suppl 1:S11. doi: 10.1186/1471-2105-15-S1-S11. Epub 2014 Jan 10.

15.

Circoletto: visualizing sequence similarity with Circos.

Darzentas N.

Bioinformatics. 2010 Oct 15;26(20):2620-1. doi: 10.1093/bioinformatics/btq484. Epub 2010 Aug 24.

PMID:
20736339
16.

iGenomicViewer: R package for visualisation of high dimension genomic data.

Gaile DP, Shepherd LA, Bruno AE, Liu S, Morrison C, Sucheston L, Miecznikowski J.

Int J Bioinform Res Appl. 2010;6(6):584-93.

PMID:
21354964
17.

Phxnlme: An R package that facilitates pharmacometric workflow of Phoenix NLME analyses.

Lim CN, Liang S, Feng K, Chittenden J, Henry A, Mouksassi S, Birnbaum AK.

Comput Methods Programs Biomed. 2017 Mar;140:121-129. doi: 10.1016/j.cmpb.2016.12.002. Epub 2016 Dec 7.

PMID:
28254068
18.

Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.

19.

chromPlot: visualization of genomic data in chromosomal context.

Oróstica KY, Verdugo RA.

Bioinformatics. 2016 Aug 1;32(15):2366-8. doi: 10.1093/bioinformatics/btw137. Epub 2016 Mar 9.

PMID:
27153580
20.

vcfr: a package to manipulate and visualize variant call format data in R.

Knaus BJ, Grünwald NJ.

Mol Ecol Resour. 2017 Jan;17(1):44-53. doi: 10.1111/1755-0998.12549. Epub 2016 Jul 12.

PMID:
27401132

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