Similar articles for PMID: 23926227

Year	Number of Results
2007	1
2009	6
2010	8
2011	15
2012	20
2013	21
2014	21
2015	20
2016	17
2017	15
2018	19
2019	15
2020	19
2021	10
2022	21
2024	0

1

OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes.

Yau C. Yau C. Bioinformatics. 2013 Oct 1;29(19):2482-4. doi: 10.1093/bioinformatics/btt416. Epub 2013 Aug 7. Bioinformatics. 2013. PMID: 23926227

2

Genome-Wide Copy Number Variation Detection Using NGS: Data Analysis and Interpretation.

Shen W, Szankasi P, Durtschi J, Kelley TW, Xu X. Shen W, et al. Methods Mol Biol. 2019;1908:113-124. doi: 10.1007/978-1-4939-9004-7_8. Methods Mol Biol. 2019. PMID: 30649724

3

AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data.

Bao L, Pu M, Messer K. Bao L, et al. Bioinformatics. 2014 Apr 15;30(8):1056-1063. doi: 10.1093/bioinformatics/btt759. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389661 Free PMC article.

4

Whole-Genome Single Nucleotide Polymorphism Microarray for Copy Number and Loss of Heterozygosity Analysis in Tumors.

Rowsey R, Znoyko I, Wolff DJ. Rowsey R, et al. Methods Mol Biol. 2019;1908:89-111. doi: 10.1007/978-1-4939-9004-7_7. Methods Mol Biol. 2019. PMID: 30649723

5

SCNVSim: somatic copy number variation and structure variation simulator.

Qin M, Liu B, Conroy JM, Morrison CD, Hu Q, Cheng Y, Murakami M, Odunsi AO, Johnson CS, Wei L, Liu S, Wang J. Qin M, et al. BMC Bioinformatics. 2015 Feb 28;16(1):66. doi: 10.1186/s12859-015-0502-7. BMC Bioinformatics. 2015. PMID: 25886838 Free PMC article.

6

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.

Li Y, Xie X. Li Y, et al. Bioinformatics. 2014 Aug 1;30(15):2121-9. doi: 10.1093/bioinformatics/btu174. Epub 2014 Apr 2. Bioinformatics. 2014. PMID: 24695406 Free PMC article.

7

Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny.

Urrutia E, Chen H, Zhou Z, Zhang NR, Jiang Y. Urrutia E, et al. Bioinformatics. 2018 Jun 15;34(12):2126-2128. doi: 10.1093/bioinformatics/bty057. Bioinformatics. 2018. PMID: 29415173 Free PMC article.

8

tHapMix: simulating tumour samples through haplotype mixtures.

Ivakhno S, Colombo C, Tanner S, Tedder P, Berri S, Cox AJ. Ivakhno S, et al. Bioinformatics. 2017 Jan 15;33(2):280-282. doi: 10.1093/bioinformatics/btw589. Epub 2016 Sep 7. Bioinformatics. 2017. PMID: 27605106

9

A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.

Sun JX, He Y, Sanford E, Montesion M, Frampton GM, Vignot S, Soria JC, Ross JS, Miller VA, Stephens PJ, Lipson D, Yelensky R. Sun JX, et al. PLoS Comput Biol. 2018 Feb 7;14(2):e1005965. doi: 10.1371/journal.pcbi.1005965. eCollection 2018 Feb. PLoS Comput Biol. 2018. PMID: 29415044 Free PMC article.

10

SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data.

Chen M, Gunel M, Zhao H. Chen M, et al. PLoS One. 2013 Nov 12;8(11):e78143. doi: 10.1371/journal.pone.0078143. eCollection 2013. PLoS One. 2013. PMID: 24265680 Free PMC article.

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