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Epigenetic and genetic influences on DNA methylation variation in maize populations.

Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM.

Plant Cell. 2013 Aug;25(8):2783-97. doi: 10.1105/tpc.113.114793. Epub 2013 Aug 6.


Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines.

Li Q, Eichten SR, Hermanson PJ, Springer NM.

Genetics. 2014 Mar;196(3):667-76. doi: 10.1534/genetics.113.158980. Epub 2013 Dec 20.


Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize.

Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM.

Plant Physiol. 2015 Aug;168(4):1262-74. doi: 10.1104/pp.15.00052. Epub 2015 Apr 13.


Heritable epigenetic variation among maize inbreds.

Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.

PLoS Genet. 2011 Nov;7(11):e1002372. doi: 10.1371/journal.pgen.1002372. Epub 2011 Nov 17.


Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may).

Wang P, Xia H, Zhang Y, Zhao S, Zhao C, Hou L, Li C, Li A, Ma C, Wang X.

BMC Genomics. 2015 Jan 23;16:21. doi: 10.1186/s12864-014-1204-7.


Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize.

Stelpflug SC, Eichten SR, Hermanson PJ, Springer NM, Kaeppler SM.

Genetics. 2014 Sep;198(1):209-18. doi: 10.1534/genetics.114.165480. Epub 2014 Jul 14.


Epigenetics and genetics: global profiling in maize inbred lines examines variation in DNA methylation.

Mach J.

Plant Cell. 2013 Aug;25(8):2769. doi: 10.1105/tpc.113.250812. Epub 2013 Aug 9. No abstract available.


Epigenetic variation, inheritance, and parent-of-origin effects of cytosine methylation in maize (Zea mays).

Lauria M, Piccinini S, Pirona R, Lund G, Viotti A, Motto M.

Genetics. 2014 Mar;196(3):653-66. doi: 10.1534/genetics.113.160515. Epub 2013 Dec 27.


Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population.

Bell JT, Tsai PC, Yang TP, Pidsley R, Nisbet J, Glass D, Mangino M, Zhai G, Zhang F, Valdes A, Shin SY, Dempster EL, Murray RM, Grundberg E, Hedman AK, Nica A, Small KS; MuTHER Consortium, Dermitzakis ET, McCarthy MI, Mill J, Spector TD, Deloukas P.

PLoS Genet. 2012;8(4):e1002629. doi: 10.1371/journal.pgen.1002629. Epub 2012 Apr 19.


Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR.

Genome Res. 2013 Oct;23(10):1663-74. doi: 10.1101/gr.152538.112. Epub 2013 Jun 5.


Epigenetic Control of Gene Expression in Maize.

Huang J, Lynn JS, Schulte L, Vendramin S, McGinnis K.

Int Rev Cell Mol Biol. 2017;328:25-48. doi: 10.1016/bs.ircmb.2016.08.002. Epub 2016 Sep 28. Review.


Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids.

He G, Chen B, Wang X, Li X, Li J, He H, Yang M, Lu L, Qi Y, Wang X, Deng XW.

Genome Biol. 2013 Jun 12;14(6):R57. doi: 10.1186/gb-2013-14-6-r57.


Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus.

Heijmans BT, Kremer D, Tobi EW, Boomsma DI, Slagboom PE.

Hum Mol Genet. 2007 Mar 1;16(5):547-54. Epub 2007 Mar 5.


Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize.

Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, Chen Z, Sun S, Hauck A, Jin W, Lai J.

Genome Res. 2014 Jan;24(1):167-76. doi: 10.1101/gr.155879.113. Epub 2013 Oct 16.


Genomic distribution of H3K9me2 and DNA methylation in a maize genome.

West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM.

PLoS One. 2014 Aug 14;9(8):e105267. doi: 10.1371/journal.pone.0105267. eCollection 2014.


Epigenetic asymmetry of imprinted genes in plant gametes.

Gutiérrez-Marcos JF, Costa LM, Dal Prà M, Scholten S, Kranz E, Perez P, Dickinson HG.

Nat Genet. 2006 Aug;38(8):876-8. Epub 2006 Jul 2.


Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions.

Dindot SV, Person R, Strivens M, Garcia R, Beaudet AL.

Genome Res. 2009 Aug;19(8):1374-83. doi: 10.1101/gr.089185.108. Epub 2009 Jun 19.


Stress-induced DNA methylation changes and their heritability in asexual dandelions.

Verhoeven KJ, Jansen JJ, van Dijk PJ, Biere A.

New Phytol. 2010 Mar;185(4):1108-18. doi: 10.1111/j.1469-8137.2009.03121.x. Epub 2009 Dec 14.


Developmental regulation of somatic imprints.

John RM, Lefebvre L.

Differentiation. 2011 Jun;81(5):270-80. doi: 10.1016/j.diff.2011.01.007. Epub 2011 Feb 11. Review.


Metastable differentially methylated regions within Arabidopsis inbred populations are associated with modified expression of non-coding transcripts.

Havecker ER, Wallbridge LM, Fedito P, Hardcastle TJ, Baulcombe DC.

PLoS One. 2012;7(9):e45242. doi: 10.1371/journal.pone.0045242. Epub 2012 Sep 20.

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