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miRNAs: small genes with big potential in metazoan phylogenetics.

Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ.

Mol Biol Evol. 2013 Nov;30(11):2369-82. doi: 10.1093/molbev/mst133. Epub 2013 Aug 2. Review.


The deep evolution of metazoan microRNAs.

Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ.

Evol Dev. 2009 Jan-Feb;11(1):50-68. doi: 10.1111/j.1525-142X.2008.00302.x.


The phylogenetic utility and functional constraint of microRNA flanking sequences.

Kenny NJ, Sin YW, Hayward A, Paps J, Chu KH, Hui JH.

Proc Biol Sci. 2015 Mar 22;282(1803):20142983. doi: 10.1098/rspb.2014.2983.


Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.


microRNA complements in deuterostomes: origin and evolution of microRNAs.

Campo-Paysaa F, Sémon M, Cameron RA, Peterson KJ, Schubert M.

Evol Dev. 2011 Jan-Feb;13(1):15-27. doi: 10.1111/j.1525-142X.2010.00452.x.


MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

Yuan Z, Sun X, Liu H, Xie J.

PLoS One. 2011 Mar 16;6(3):e17666. doi: 10.1371/journal.pone.0017666.


The identification of microRNAs in calcisponges: independent evolution of microRNAs in basal metazoans.

Robinson JM, Sperling EA, Bergum B, Adamski M, Nichols SA, Adamska M, Peterson KJ.

J Exp Zool B Mol Dev Evol. 2013 Mar;320(2):84-93. doi: 10.1002/jez.b.22485. Epub 2013 Jan 24.


Integrated evolutionary analysis of human miRNA gene clusters and families implicates evolutionary relationships.

Guo L, Zhao Y, Zhang H, Yang S, Chen F.

Gene. 2014 Jan 15;534(1):24-32. doi: 10.1016/j.gene.2013.10.037. Epub 2013 Oct 24.


The evolution of core proteins involved in microRNA biogenesis.

Murphy D, Dancis B, Brown JR.

BMC Evol Biol. 2008 Mar 25;8:92. doi: 10.1186/1471-2148-8-92.


Functional shifts in insect microRNA evolution.

Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S.

Genome Biol Evol. 2010;2:686-96. doi: 10.1093/gbe/evq053. Epub 2010 Sep 3.


Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.


Substantial loss of conserved and gain of novel MicroRNA families in flatworms.

Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L.

Mol Biol Evol. 2013 Dec;30(12):2619-28. doi: 10.1093/molbev/mst155. Epub 2013 Sep 11.


A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs.

Walz N, Christalla T, Tessmer U, Grundhoff A.

J Virol. 2010 Jan;84(2):716-28. doi: 10.1128/JVI.01302-09. Epub 2009 Nov 4.


Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus.

Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M.

BMC Genomics. 2011 Jun 24;12:328. doi: 10.1186/1471-2164-12-328.


Characterization and evolution of conserved MicroRNA through duplication events in date palm (Phoenix dactylifera).

Xiao Y, Xia W, Yang Y, Mason AS, Lei X, Ma Z.

PLoS One. 2013 Aug 8;8(8):e71435. doi: 10.1371/journal.pone.0071435. eCollection 2013.


Characterization of microRNAs in mud crab Scylla paramamosain under Vibrio parahaemolyticus infection.

Li S, Zhu S, Li C, Zhang Z, Zhou L, Wang S, Wang S, Zhang Y, Wen X.

PLoS One. 2013 Aug 30;8(8):e73392. doi: 10.1371/journal.pone.0073392. eCollection 2013.


Exploring the miRNA regulatory network using evolutionary correlations.

Obermayer B, Levine E.

PLoS Comput Biol. 2014 Oct 9;10(10):e1003860. doi: 10.1371/journal.pcbi.1003860. eCollection 2014 Oct. Erratum in: PLoS Comput Biol. 2014 Nov;10(11):e1004015.


Discovery and characterization of medaka miRNA genes by next generation sequencing platform.

Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S8. doi: 10.1186/1471-2164-11-S4-S8.


The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint.

Sempere LF, Cole CN, McPeek MA, Peterson KJ.

J Exp Zool B Mol Dev Evol. 2006 Nov 15;306(6):575-88.


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