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Items: 1 to 20 of 123

1.

A systematic approach to document cyclotide distribution in plant species from genomic, transcriptomic, and peptidomic analysis.

Gerlach SL, Göransson U, Kaas Q, Craik DJ, Mondal D, Gruber CW.

Biopolymers. 2013 Sep;100(5):433-7. doi: 10.1002/bip.22258.

PMID:
23907794
2.

Cyclotide discovery in Gentianales revisited--identification and characterization of cyclic cystine-knot peptides and their phylogenetic distribution in Rubiaceae plants.

Koehbach J, Attah AF, Berger A, Hellinger R, Kutchan TM, Carpenter EJ, Rolf M, Sonibare MA, Moody JO, Wong GK, Dessein S, Greger H, Gruber CW.

Biopolymers. 2013 Sep;100(5):438-52. doi: 10.1002/bip.22328.

3.

Discovery of cyclotides in the fabaceae plant family provides new insights into the cyclization, evolution, and distribution of circular proteins.

Poth AG, Colgrave ML, Philip R, Kerenga B, Daly NL, Anderson MA, Craik DJ.

ACS Chem Biol. 2011 Apr 15;6(4):345-55. doi: 10.1021/cb100388j. Epub 2011 Jan 20.

PMID:
21194241
4.

Distribution and evolution of circular miniproteins in flowering plants.

Gruber CW, Elliott AG, Ireland DC, Delprete PG, Dessein S, Göransson U, Trabi M, Wang CK, Kinghorn AB, Robbrecht E, Craik DJ.

Plant Cell. 2008 Sep;20(9):2471-83. doi: 10.1105/tpc.108.062331. Epub 2008 Sep 30.

5.

Discovery of linear cyclotides in monocot plant Panicum laxum of Poaceae family provides new insights into evolution and distribution of cyclotides in plants.

Nguyen GK, Lian Y, Pang EW, Nguyen PQ, Tran TD, Tam JP.

J Biol Chem. 2013 Feb 1;288(5):3370-80. doi: 10.1074/jbc.M112.415356. Epub 2012 Nov 29.

6.

Cyclotides associate with leaf vasculature and are the products of a novel precursor in petunia (Solanaceae).

Poth AG, Mylne JS, Grassl J, Lyons RE, Millar AH, Colgrave ML, Craik DJ.

J Biol Chem. 2012 Aug 3;287(32):27033-46. doi: 10.1074/jbc.M112.370841. Epub 2012 Jun 14.

7.
8.

Discovery and characterization of a linear cyclotide from Viola odorata: implications for the processing of circular proteins.

Ireland DC, Colgrave ML, Nguyencong P, Daly NL, Craik DJ.

J Mol Biol. 2006 Apr 14;357(5):1522-35. Epub 2006 Feb 2.

PMID:
16488428
9.

Discovery of cyclotide-like protein sequences in graminaceous crop plants: ancestral precursors of circular proteins?

Mulvenna JP, Mylne JS, Bharathi R, Burton RA, Shirley NJ, Fincher GB, Anderson MA, Craik DJ.

Plant Cell. 2006 Sep;18(9):2134-44. Epub 2006 Aug 25.

10.

Cyclotide proteins and precursors from the genus Gloeospermum: filling a blank spot in the cyclotide map of Violaceae.

Burman R, Gruber CW, Rizzardi K, Herrmann A, Craik DJ, Gupta MP, Göransson U.

Phytochemistry. 2010 Jan;71(1):13-20. doi: 10.1016/j.phytochem.2009.09.023. Epub 2009 Oct 30.

PMID:
19879608
11.

A continent of plant defense peptide diversity: cyclotides in Australian Hybanthus (Violaceae).

Simonsen SM, Sando L, Ireland DC, Colgrave ML, Bharathi R, Göransson U, Craik DJ.

Plant Cell. 2005 Nov;17(11):3176-89. Epub 2005 Sep 30.

12.

Discovery and characterization of novel cyclotides originated from chimeric precursors consisting of albumin-1 chain a and cyclotide domains in the Fabaceae family.

Nguyen GK, Zhang S, Nguyen NT, Nguyen PQ, Chiu MS, Hardjojo A, Tam JP.

J Biol Chem. 2011 Jul 8;286(27):24275-87. doi: 10.1074/jbc.M111.229922. Epub 2011 May 19.

13.

Analysis and classification of circular proteins in CyBase.

Kaas Q, Craik DJ.

Biopolymers. 2010;94(5):584-91. doi: 10.1002/bip.21424.

PMID:
20564021
14.

Circular proteins from Melicytus (Violaceae) refine the conserved protein and gene architecture of cyclotides.

Trabi M, Mylne JS, Sando L, Craik DJ.

Org Biomol Chem. 2009 Jun 7;7(11):2378-88. doi: 10.1039/b823020j. Epub 2009 Apr 6.

PMID:
19462049
15.
16.

A new "era" for cyclotide sequencing.

Colgrave ML, Poth AG, Kaas Q, Craik DJ.

Biopolymers. 2010;94(5):592-601. doi: 10.1002/bip.21400.

PMID:
20564007
17.

Understanding the Diversity and Distribution of Cyclotides from Plants of Varied Genetic Origin.

Ravipati AS, Poth AG, Troeira Henriques S, Bhandari M, Huang YH, Nino J, Colgrave ML, Craik DJ.

J Nat Prod. 2017 May 26;80(5):1522-1530. doi: 10.1021/acs.jnatprod.7b00061. Epub 2017 May 4.

PMID:
28471681
18.

Chemical synthesis and biosynthesis of the cyclotide family of circular proteins.

Gunasekera S, Daly NL, Anderson MA, Craik DJ.

IUBMB Life. 2006 Sep;58(9):515-24. Review.

19.

Discovery, structure, function, and applications of cyclotides: circular proteins from plants.

Weidmann J, Craik DJ.

J Exp Bot. 2016 Aug;67(16):4801-12. doi: 10.1093/jxb/erw210. Epub 2016 May 23. Review.

PMID:
27222514
20.

Two Blast-independent tools, CyPerl and CyExcel, for harvesting hundreds of novel cyclotides and analogues from plant genomes and protein databases.

Zhang J, Hua Z, Huang Z, Chen Q, Long Q, Craik DJ, Baker AJ, Shu W, Liao B.

Planta. 2015 Apr;241(4):929-40. doi: 10.1007/s00425-014-2229-5. Epub 2014 Dec 21.

PMID:
25528148

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