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Items: 1 to 20 of 104

1.

An integrated tool to study MHC region: accurate SNV detection and HLA genes typing in human MHC region using targeted high-throughput sequencing.

Cao H, Wu J, Wang Y, Jiang H, Zhang T, Liu X, Xu Y, Liang D, Gao P, Sun Y, Gifford B, D'Ascenzo M, Liu X, Tellier LC, Yang F, Tong X, Chen D, Zheng J, Li W, Richmond T, Xu X, Wang J, Li Y.

PLoS One. 2013 Jul 24;8(7):e69388. doi: 10.1371/journal.pone.0069388. Print 2013.

2.

A short-read multiplex sequencing method for reliable, cost-effective and high-throughput genotyping in large-scale studies.

Cao H, Wang Y, Zhang W, Chai X, Zhang X, Chen S, Yang F, Zhang C, Guo Y, Liu Y, Tang Z, Chen C, Xue Y, Zhen H, Xu Y, Rao B, Liu T, Zhao M, Zhang W, Li Y, Zhang X, Tellier LC, Krogh A, Kristiansen K, Wang J, Li J.

Hum Mutat. 2013 Dec;34(12):1715-20. doi: 10.1002/humu.22439. Epub 2013 Oct 7. Erratum in: Hum Mutat. 2014 Feb;35(2):270.

PMID:
24014314
3.

Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq.

Selvaraj S, Schmitt AD, Dixon JR, Ren B.

BMC Genomics. 2015 Nov 5;16:900. doi: 10.1186/s12864-015-1949-7.

4.

Deep sequencing of the MHC region in the Chinese population contributes to studies of complex disease.

Zhou F, Cao H, Zuo X, Zhang T, Zhang X, Liu X, Xu R, Chen G, Zhang Y, Zheng X, Jin X, Gao J, Mei J, Sheng Y, Li Q, Liang B, Shen J, Shen C, Jiang H, Zhu C, Fan X, Xu F, Yue M, Yin X, Ye C, Zhang C, Liu X, Yu L, Wu J, Chen M, Zhuang X, Tang L, Shao H, Wu L, Li J, Xu Y, Zhang Y, Zhao S, Wang Y, Li G, Xu H, Zeng L, Wang J, Bai M, Chen Y, Chen W, Kang T, Wu Y, Xu X, Zhu Z, Cui Y, Wang Z, Yang C, Wang P, Xiang L, Chen X, Zhang A, Gao X, Zhang F, Xu J, Zheng M, Zheng J, Zhang J, Yu X, Li Y, Yang S, Yang H, Wang J, Liu J, Hammarström L, Sun L, Wang J, Zhang X.

Nat Genet. 2016 Jul;48(7):740-6. doi: 10.1038/ng.3576. Epub 2016 May 23.

PMID:
27213287
5.

Development of a high-resolution NGS-based HLA-typing and analysis pipeline.

Wittig M, Anmarkrud JA, Kässens JC, Koch S, Forster M, Ellinghaus E, Hov JR, Sauer S, Schimmler M, Ziemann M, Görg S, Jacob F, Karlsen TH, Franke A.

Nucleic Acids Res. 2015 Jun 23;43(11):e70. doi: 10.1093/nar/gkv184. Epub 2015 Mar 9.

6.

HLA diversity in the 1000 genomes dataset.

Gourraud PA, Khankhanian P, Cereb N, Yang SY, Feolo M, Maiers M, Rioux JD, Hauser S, Oksenberg J.

PLoS One. 2014 Jul 2;9(7):e97282. doi: 10.1371/journal.pone.0097282. eCollection 2014.

7.

High-throughput, high-fidelity HLA genotyping with deep sequencing.

Wang C, Krishnakumar S, Wilhelmy J, Babrzadeh F, Stepanyan L, Su LF, Levinson D, Fernandez-Viña MA, Davis RW, Davis MM, Mindrinos M.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):8676-81. doi: 10.1073/pnas.1206614109. Epub 2012 May 15.

8.

HLA DNA typing: past, present, and future.

Erlich H.

Tissue Antigens. 2012 Jul;80(1):1-11. doi: 10.1111/j.1399-0039.2012.01881.x. Review.

PMID:
22651253
9.

Next-Generation Sequencing of the HLA locus: Methods and impacts on HLA typing, population genetics and disease association studies.

Carapito R, Radosavljevic M, Bahram S.

Hum Immunol. 2016 Nov;77(11):1016-1023. doi: 10.1016/j.humimm.2016.04.002. Epub 2016 Apr 5. Review.

PMID:
27060029
10.

Conserved extended haplotypes of the major histocompatibility complex: further characterization.

Dorak MT, Shao W, Machulla HK, Lobashevsky ES, Tang J, Park MH, Kaslow RA.

Genes Immun. 2006 Sep;7(6):450-67. Epub 2006 Jun 22.

PMID:
16791278
11.

The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity.

Dapprich J, Ferriola D, Mackiewicz K, Clark PM, Rappaport E, D'Arcy M, Sasson A, Gai X, Schug J, Kaestner KH, Monos D.

BMC Genomics. 2016 Jul 9;17:486. doi: 10.1186/s12864-016-2836-6.

12.

HLA typing from RNA-seq data using hierarchical read weighting [corrected].

Kim HJ, Pourmand N.

PLoS One. 2013 Jun 28;8(6):e67885. doi: 10.1371/journal.pone.0067885. Print 2013. Erratum in: PLoS One. 2014;9(7):e104664.

13.

The human leucocyte antigens and clinical medicine: an overview.

McCluskey J, Peh CA.

Rev Immunogenet. 1999;1(1):3-20. Review.

PMID:
11256570
14.

HLA typing from 1000 genomes whole genome and whole exome illumina data.

Major E, Rigó K, Hague T, Bérces A, Juhos S.

PLoS One. 2013 Nov 6;8(11):e78410. doi: 10.1371/journal.pone.0078410. eCollection 2013.

15.

The major histocompatibility complex region marked by HSP70-1 and HSP70-2 variants is associated with clozapine-induced agranulocytosis in two different ethnic groups.

Corzo D, Yunis JJ, Salazar M, Lieberman JA, Howard A, Awdeh Z, Alper CA, Yunis EJ.

Blood. 1995 Nov 15;86(10):3835-40.

16.

Sequence capture and next generation resequencing of the MHC region highlights potential transplantation determinants in HLA identical haematopoietic stem cell transplantation.

Pröll J, Danzer M, Stabentheiner S, Niklas N, Hackl C, Hofer K, Atzmüller S, Hufnagl P, Gülly C, Hauser H, Krieger O, Gabriel C.

DNA Res. 2011 Aug;18(4):201-10. doi: 10.1093/dnares/dsr008. Epub 2011 May 28.

17.

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.

Nariai N, Kojima K, Saito S, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Yasuda J, Nagasaki M.

BMC Genomics. 2015;16 Suppl 2:S7. doi: 10.1186/1471-2164-16-S2-S7. Epub 2015 Jan 21.

18.

New major histocompatibility complex genes.

Marshall B, Leelayuwat C, Degli-Esposti MA, Pinelli M, Abraham LJ, Dawkins RL.

Hum Immunol. 1993 Sep;38(1):24-9.

PMID:
8307783
19.

An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data.

Wang Y, Lu J, Yu J, Gibbs RA, Yu F.

Genome Res. 2013 May;23(5):833-42. doi: 10.1101/gr.146084.112. Epub 2013 Jan 7.

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