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Items: 1 to 20 of 87

1.

Natural antisense transcripts in plants: a review and identification in soybean infected with Phakopsora pachyrhizi SuperSAGE library.

Britto-Kido Sde A, Ferreira Neto JR, Pandolfi V, Marcelino-Guimarães FC, Nepomuceno AL, Vilela Abdelnoor R, Benko-Iseppon AM, Kido EA.

ScientificWorldJournal. 2013 Jun 26;2013:219798. doi: 10.1155/2013/219798. Print 2013. Review.

2.

Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max).

Zheng H, Qiyan J, Zhiyong N, Hui Z.

BMC Genomics. 2013 Apr 24;14:280. doi: 10.1186/1471-2164-14-280.

3.

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

Jin H, Vacic V, Girke T, Lonardi S, Zhu JK.

BMC Mol Biol. 2008 Jan 14;9:6. doi: 10.1186/1471-2199-9-6.

4.

Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.

Lu T, Zhu C, Lu G, Guo Y, Zhou Y, Zhang Z, Zhao Y, Li W, Lu Y, Tang W, Feng Q, Han B.

BMC Genomics. 2012 Dec 22;13:721. doi: 10.1186/1471-2164-13-721.

5.

Gene expression and proteomic analysis of the formation of Phakopsora pachyrhizi appressoria.

Stone CL, McMahon MB, Fortis LL, Nuñez A, Smythers GW, Luster DG, Frederick RD.

BMC Genomics. 2012 Jun 22;13:269. doi: 10.1186/1471-2164-13-269.

6.

Prediction of trans-antisense transcripts in Arabidopsis thaliana.

Wang H, Chua NH, Wang XJ.

Genome Biol. 2006;7(10):R92. Epub 2006 Oct 13.

7.

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana.

Wang XJ, Gaasterland T, Chua NH.

Genome Biol. 2005;6(4):R30. Epub 2005 Mar 15.

8.

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U.

Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1.

9.

Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing.

Tremblay A, Hosseini P, Li S, Alkharouf NW, Matthews BF.

BMC Genomics. 2013 Sep 11;14:614. doi: 10.1186/1471-2164-14-614.

10.

Gene expression analysis in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) in an early growth stage.

Panthee DR, Yuan JS, Wright DL, Marois JJ, Mailhot D, Stewart CN Jr.

Funct Integr Genomics. 2007 Oct;7(4):291-301. Epub 2007 Feb 22.

PMID:
17318271
11.

Genome-wide view of natural antisense transcripts in Arabidopsis thaliana.

Yuan C, Wang J, Harrison AP, Meng X, Chen D, Chen M.

DNA Res. 2015 Jun;22(3):233-43. doi: 10.1093/dnares/dsv008. Epub 2015 Apr 28.

12.

Pseudogenes as an alternative source of natural antisense transcripts.

Muro EM, Andrade-Navarro MA.

BMC Evol Biol. 2010 Nov 3;10:338. doi: 10.1186/1471-2148-10-338.

13.

Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa.

Yu X, Yang J, Li X, Liu X, Sun C, Wu F, He Y.

BMC Plant Biol. 2013 Dec 10;13:208. doi: 10.1186/1471-2229-13-208.

14.

The distribution and evolution of Arabidopsis thaliana cis natural antisense transcripts.

Bouchard J, Oliver C, Harrison PM.

BMC Genomics. 2015 Jun 9;16:444. doi: 10.1186/s12864-015-1587-0.

15.

In silico discovery of human natural antisense transcripts.

Li YY, Qin L, Guo ZM, Liu L, Xu H, Hao P, Su J, Shi Y, He WZ, Li YX.

BMC Bioinformatics. 2006 Jan 13;7:18.

16.

antiCODE: a natural sense-antisense transcripts database.

Yin Y, Zhao Y, Wang J, Liu C, Chen S, Chen R, Zhao H.

BMC Bioinformatics. 2007 Aug 30;8:319.

17.

Expression patterns in soybean resistant to Phakopsora pachyrhizi reveal the importance of peroxidases and lipoxygenases.

Choi JJ, Alkharouf NW, Schneider KT, Matthews BF, Frederick RD.

Funct Integr Genomics. 2008 Nov;8(4):341-59. doi: 10.1007/s10142-008-0080-0. Epub 2008 Apr 15.

PMID:
18414911
18.

Screening and identification of natural antisense transcripts in Helicobacter pylori by a novel approach based on RNase I protection assay.

Xiao B, Li W, Guo G, Li BS, Liu Z, Tang B, Mao XH, Zou QM.

Mol Biol Rep. 2009 Sep;36(7):1853-8. doi: 10.1007/s11033-008-9390-5. Epub 2008 Dec 23.

PMID:
19105047
19.

Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis.

Zhan S, Lukens L.

Plant Physiol. 2013 Apr;161(4):2171-80. doi: 10.1104/pp.112.212100. Epub 2013 Mar 1.

20.

Differential expression of four soybean bZIP genes during Phakopsora pachyrhizi infection.

Alves MS, Soares ZG, Vidigal PM, Barros EG, Poddanosqui AM, Aoyagi LN, Abdelnoor RV, Marcelino-Guimarães FC, Fietto LG.

Funct Integr Genomics. 2015 Nov;15(6):685-96. doi: 10.1007/s10142-015-0445-0. Epub 2015 May 27.

PMID:
26013145

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