Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 541

1.
2.

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data.

García-Alcalde F, García-López F, Dopazo J, Conesa A.

Bioinformatics. 2011 Jan 1;27(1):137-9. doi: 10.1093/bioinformatics/btq594. Epub 2010 Nov 23.

3.

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.

4.

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA.

Kamburov A, Cavill R, Ebbels TM, Herwig R, Keun HC.

Bioinformatics. 2011 Oct 15;27(20):2917-8. doi: 10.1093/bioinformatics/btr499. Epub 2011 Sep 4.

PMID:
21893519
5.

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Neuweger H, Albaum SP, Dondrup M, Persicke M, Watt T, Niehaus K, Stoye J, Goesmann A.

Bioinformatics. 2008 Dec 1;24(23):2726-32. doi: 10.1093/bioinformatics/btn452. Epub 2008 Sep 2.

PMID:
18765459
6.

iPEAP: integrating multiple omics and genetic data for pathway enrichment analysis.

Sun H, Wang H, Zhu R, Tang K, Gong Q, Cui J, Cao Z, Liu Q.

Bioinformatics. 2014 Mar 1;30(5):737-9. doi: 10.1093/bioinformatics/btt576. Epub 2013 Oct 3.

PMID:
24092766
7.

FunRich: An open access standalone functional enrichment and interaction network analysis tool.

Pathan M, Keerthikumar S, Ang CS, Gangoda L, Quek CY, Williamson NA, Mouradov D, Sieber OM, Simpson RJ, Salim A, Bacic A, Hill AF, Stroud DA, Ryan MT, Agbinya JI, Mariadason JM, Burgess AW, Mathivanan S.

Proteomics. 2015 Aug;15(15):2597-601. doi: 10.1002/pmic.201400515. Epub 2015 Jun 17.

PMID:
25921073
8.

MetPA: a web-based metabolomics tool for pathway analysis and visualization.

Xia J, Wishart DS.

Bioinformatics. 2010 Sep 15;26(18):2342-4. doi: 10.1093/bioinformatics/btq418. Epub 2010 Jul 13.

PMID:
20628077
9.

MassTRIX reloaded: combined analysis and visualization of transcriptome and metabolome data.

Wägele B, Witting M, Schmitt-Kopplin P, Suhre K.

PLoS One. 2012;7(7):e39860. doi: 10.1371/journal.pone.0039860. Epub 2012 Jul 6.

10.

IIS--Integrated Interactome System: a web-based platform for the annotation, analysis and visualization of protein-metabolite-gene-drug interactions by integrating a variety of data sources and tools.

Carazzolle MF, de Carvalho LM, Slepicka HH, Vidal RO, Pereira GA, Kobarg J, Meirelles GV.

PLoS One. 2014 Jun 20;9(6):e100385. doi: 10.1371/journal.pone.0100385. eCollection 2014. Erratum in: PLoS One. 2014;9(9):e108101.

11.

OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize.

Colmsee C, Mascher M, Czauderna T, Hartmann A, Schlüter U, Zellerhoff N, Schmitz J, Bräutigam A, Pick TR, Alter P, Gahrtz M, Witt S, Fernie AR, Börnke F, Fahnenstich H, Bucher M, Dresselhaus T, Weber AP, Schreiber F, Scholz U, Sonnewald U.

BMC Plant Biol. 2012 Dec 29;12:245. doi: 10.1186/1471-2229-12-245.

12.

The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets.

Carroll AJ, Badger MR, Harvey Millar A.

BMC Bioinformatics. 2010 Jul 14;11:376. doi: 10.1186/1471-2105-11-376.

13.

MGV: a generic graph viewer for comparative omics data.

Symons S, Nieselt K.

Bioinformatics. 2011 Aug 15;27(16):2248-55. doi: 10.1093/bioinformatics/btr351. Epub 2011 Jun 11.

PMID:
21666268
14.

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks.

May P, Christian N, Ebenhöh O, Weckwerth W, Walther D.

Methods Mol Biol. 2011;694:341-63. doi: 10.1007/978-1-60761-977-2_21.

PMID:
21082444
15.

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software.

Eichner J, Rosenbaum L, Wrzodek C, Häring HU, Zell A, Lehmann R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Sep 1;966:77-82. doi: 10.1016/j.jchromb.2014.04.030. Epub 2014 Apr 25.

PMID:
24811976
16.

MetaboAnalyst: a web server for metabolomic data analysis and interpretation.

Xia J, Psychogios N, Young N, Wishart DS.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W652-60. doi: 10.1093/nar/gkp356. Epub 2009 May 8.

17.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

18.
19.

Integrating multiple 'omics' analysis for microbial biology: application and methodologies.

Zhang W, Li F, Nie L.

Microbiology. 2010 Feb;156(Pt 2):287-301. doi: 10.1099/mic.0.034793-0. Epub 2009 Nov 12. Review.

PMID:
19910409
20.

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.

Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S21. doi: 10.1186/1471-2105-13-S4-S21.

Supplemental Content

Support Center