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Concurrent analysis of copy number variation and gene expression: application in paired non-smoking female lung cancer patients.

Chen PC, Lu TP, Chang JC, Lai LC, Tsai MH, Hsiao CK, Chuang EY.

Int J Data Min Bioinform. 2013;8(1):92-104.


Genome-wide combination profiling of DNA copy number and methylation for deciphering biomarkers in non-small cell lung cancer patients.

Son JW, Jeong KJ, Jean WS, Park SY, Jheon S, Cho HM, Park CG, Lee HY, Kang J.

Cancer Lett. 2011 Dec 1;311(1):29-37. doi: 10.1016/j.canlet.2011.06.021. Epub 2011 Jun 24.


Overexpression of RhoE in Non-small Cell Lung Cancer (NSCLC) is associated with smoking and correlates with DNA copy number changes.

Cuiyan Z, Jie H, Fang Z, Kezhi Z, Junting W, Susheng S, Xiaoli F, Ning L, Xinhua M, Zhaoli C, Kang S, Bin Q, Baozhong L, Sheng C, Meihua X, Jie H.

Cancer Biol Ther. 2007 Mar;6(3):335-42. Epub 2007 Mar 4.


Integrated analyses of copy number variations and gene expression in lung adenocarcinoma.

Lu TP, Lai LC, Tsai MH, Chen PC, Hsu CP, Lee JM, Hsiao CK, Chuang EY.

PLoS One. 2011;6(9):e24829. doi: 10.1371/journal.pone.0024829. Epub 2011 Sep 14.


Silver-enhanced in situ hybridization for determination of EGFR copy number alterations in non-small cell lung cancer.

Wulf MA, Bode B, Zimmermann D, Rufibach K, Weder W, Moch H, Soltermann A, Tischler V.

Am J Surg Pathol. 2012 Dec;36(12):1801-8. doi: 10.1097/PAS.0b013e31826ff153.


Genetic network and gene set enrichment analysis to identify biomarkers related to cigarette smoking and lung cancer.

Fang X, Netzer M, Baumgartner C, Bai C, Wang X.

Cancer Treat Rev. 2013 Feb;39(1):77-88. doi: 10.1016/j.ctrv.2012.06.001. Epub 2012 Jul 11.


Genomic copy number alterations with transcriptional deregulation at 6p identify an aggressive HCC phenotype.

Kwon SM, Kim DS, Won NH, Park SJ, Chwae YJ, Kang HC, Lee SH, Baik EJ, Thorgeirsson SS, Woo HG.

Carcinogenesis. 2013 Jul;34(7):1543-50. doi: 10.1093/carcin/bgt095. Epub 2013 Mar 18. Erratum in: Carcinogenesis. 2013 Nov;34(11):2682.


Correlation of SHOX2 gene amplification and DNA methylation in lung cancer tumors.

Schneider KU, Dietrich D, Fleischhacker M, Leschber G, Merk J, Schäper F, Stapert HR, Vossenaar ER, Weickmann S, Liebenberg V, Kneip C, Seegebarth A, Erdogan F, Rappold G, Schmidt B.

BMC Cancer. 2011 Mar 22;11:102. doi: 10.1186/1471-2407-11-102.


Histological specificity of alterations and expression of KIT and KITLG in non-small cell lung carcinoma.

Salomonsson A, Jönsson M, Isaksson S, Karlsson A, Jönsson P, Gaber A, Bendahl PO, Johansson L, Brunnström H, Jirström K, Borg Å, Staaf J, Planck M.

Genes Chromosomes Cancer. 2013 Nov;52(11):1088-96. doi: 10.1002/gcc.22103. Epub 2013 Sep 10.


Copy number variations of chromosome 17p13.1 might be linked to high risk of lung cancer in heavy smokers.

Lee M, Lee Y, Cho HJ, Hong J, Kwon SJ, Park CG, Lee HY, Son JW, Kang J.

Mol Biol Rep. 2011 Nov;38(8):5211-7. doi: 10.1007/s11033-010-0672-3. Epub 2011 Jan 4.


The database of chromosome imbalance regions and genes resided in lung cancer from Asian and Caucasian identified by array-comparative genomic hybridization.

Lo FY, Chang JW, Chang IS, Chen YJ, Hsu HS, Huang SF, Tsai FY, Jiang SS, Kanteti R, Nandi S, Salgia R, Wang YC.

BMC Cancer. 2012 Jun 12;12:235. doi: 10.1186/1471-2407-12-235.


A high-dimensional, deep-sequencing study of lung adenocarcinoma in female never-smokers.

Kim SC, Jung Y, Park J, Cho S, Seo C, Kim J, Kim P, Park J, Seo J, Kim J, Park S, Jang I, Kim N, Yang JO, Lee B, Rho K, Jung Y, Keum J, Lee J, Han J, Kang S, Bae S, Choi SJ, Kim S, Lee JE, Kim W, Kim J, Lee S.

PLoS One. 2013;8(2):e55596. doi: 10.1371/journal.pone.0055596. Epub 2013 Feb 6.


SOX7 is down-regulated in lung cancer.

Hayano T, Garg M, Yin D, Sudo M, Kawamata N, Shi S, Chien W, Ding LW, Leong G, Mori S, Xie D, Tan P, Koeffler HP.

J Exp Clin Cancer Res. 2013 Apr 4;32:17. doi: 10.1186/1756-9966-32-17.


A functional copy number variation in the WWOX gene is associated with lung cancer risk in Chinese.

Yang L, Liu B, Huang B, Deng J, Li H, Yu B, Qiu F, Cheng M, Wang H, Yang R, Yang X, Zhou Y, Lu J.

Hum Mol Genet. 2013 May 1;22(9):1886-94. doi: 10.1093/hmg/ddt019. Epub 2013 Jan 22.


Array-comparative genomic hybridization reveals loss of SOCS6 is associated with poor prognosis in primary lung squamous cell carcinoma.

Sriram KB, Larsen JE, Savarimuthu Francis SM, Wright CM, Clarke BE, Duhig EE, Brown KM, Hayward NK, Yang IA, Bowman RV, Fong KM.

PLoS One. 2012;7(2):e30398. doi: 10.1371/journal.pone.0030398. Epub 2012 Feb 17.


A comparative and integrative approach identifies ATPase family, AAA domain containing 2 as a likely driver of cell proliferation in lung adenocarcinoma.

Fouret R, Laffaire J, Hofman P, Beau-Faller M, Mazieres J, Validire P, Girard P, Camilleri-Bröet S, Vaylet F, Leroy-Ladurie F, Soria JC, Fouret P.

Clin Cancer Res. 2012 Oct 15;18(20):5606-16. doi: 10.1158/1078-0432.CCR-12-0505. Epub 2012 Aug 22.


Non-small cell lung cancer exhibits transcript overexpression of genes associated with homologous recombination and DNA replication pathways.

Saviozzi S, Ceppi P, Novello S, Ghio P, Lo Iacono M, Borasio P, Cambieri A, Volante M, Papotti M, Calogero RA, Scagliotti GV.

Cancer Res. 2009 Apr 15;69(8):3390-6. doi: 10.1158/0008-5472.CAN-08-2981. Epub 2009 Apr 7.


Significance of p63 amplification and overexpression in lung cancer development and prognosis.

Massion PP, Taflan PM, Jamshedur Rahman SM, Yildiz P, Shyr Y, Edgerton ME, Westfall MD, Roberts JR, Pietenpol JA, Carbone DP, Gonzalez AL.

Cancer Res. 2003 Nov 1;63(21):7113-21.


Clinical significance of CD151 gene expression in non-small cell lung cancer.

Tokuhara T, Hasegawa H, Hattori N, Ishida H, Taki T, Tachibana S, Sasaki S, Miyake M.

Clin Cancer Res. 2001 Dec;7(12):4109-14.


Decrease of PDSS2 expression, a novel tumor suppressor, in non-small cell lung cancer.

Chen P, Yu J, Knecht J, Chen Q.

Cancer Epidemiol. 2013 Apr;37(2):166-71. doi: 10.1016/j.canep.2012.12.004. Epub 2013 Jan 10.


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