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Items: 1 to 20 of 113

1.

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing.

Wang XQ, Zhao L, Eaton DA, Li DZ, Guo ZH.

Mol Ecol Resour. 2013 Sep;13(5):938-45. doi: 10.1111/1755-0998.12136. Epub 2013 Jul 13.

PMID:
23848836
2.

Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae).

Zhang LN, Zhang XZ, Zhang YX, Zeng CX, Ma PF, Zhao L, Guo ZH, Li DZ.

Mol Ecol Resour. 2014 Sep;14(5):988-99. doi: 10.1111/1755-0998.12248. Epub 2014 Apr 2.

PMID:
24606129
3.

Large multi-locus plastid phylogeny of the tribe Arundinarieae (Poaceae: Bambusoideae) reveals ten major lineages and low rate of molecular divergence.

Zeng CX, Zhang YX, Triplett JK, Yang JB, Li DZ.

Mol Phylogenet Evol. 2010 Aug;56(2):821-39. doi: 10.1016/j.ympev.2010.03.041. Epub 2010 Apr 8.

PMID:
20381627
4.

Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).

Ma PF, Zhang YX, Zeng CX, Guo ZH, Li DZ.

Syst Biol. 2014 Nov;63(6):933-50. doi: 10.1093/sysbio/syu054. Epub 2014 Aug 4.

PMID:
25092479
5.

Higher level phylogenetic relationships within the bamboos (Poaceae: Bambusoideae) based on five plastid markers.

Kelchner SA; Bamboo Phylogeny Group.

Mol Phylogenet Evol. 2013 May;67(2):404-13. doi: 10.1016/j.ympev.2013.02.005. Epub 2013 Feb 20.

PMID:
23454093
6.

Genome-wide RAD sequencing data provide unprecedented resolution of the phylogeny of temperate bamboos (Poaceae: Bambusoideae).

Wang X, Ye X, Zhao L, Li D, Guo Z, Zhuang H.

Sci Rep. 2017 Sep 14;7(1):11546. doi: 10.1038/s41598-017-11367-x.

7.

Independent allopolyploidization events preceded speciation in the temperate and tropical woody bamboos.

Triplett JK, Clark LG, Fisher AE, Wen J.

New Phytol. 2014 Oct;204(1):66-73. doi: 10.1111/nph.12988. Epub 2014 Aug 7.

8.

RAD tag sequencing as a source of SNP markers in Cynara cardunculus L.

Scaglione D, Acquadro A, Portis E, Tirone M, Knapp SJ, Lanteri S.

BMC Genomics. 2012 Jan 3;13:3. doi: 10.1186/1471-2164-13-3.

9.

High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae).

Zhang YJ, Ma PF, Li DZ.

PLoS One. 2011;6(5):e20596. doi: 10.1371/journal.pone.0020596. Epub 2011 May 31.

10.

Non-monophyly of the woody bamboos (Bambuseae; Poaceae): a multi-gene region phylogenetic analysis of Bambusoideae s.s.

Sungkaew S, Stapleton CM, Salamin N, Hodkinson TR.

J Plant Res. 2009 Jan;122(1):95-108. doi: 10.1007/s10265-008-0192-6. Epub 2008 Nov 19.

PMID:
19018609
11.

Molecular phylogeny of the arthrostylidioid bamboos (Poaceae: Bambusoideae: Bambuseae: Arthrostylidiinae) and new genus Didymogonyx.

Tyrrell CD, Santos-Gonçalves AP, Londoño X, Clark LG.

Mol Phylogenet Evol. 2012 Oct;65(1):136-48. doi: 10.1016/j.ympev.2012.05.033. Epub 2012 Jun 6.

PMID:
22683436
12.

The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos.

Wysocki WP, Ruiz-Sanchez E, Yin Y, Duvall MR.

BMC Genomics. 2016 May 20;17:384. doi: 10.1186/s12864-016-2707-1.

13.

SNP discovery using Paired-End RAD-tag sequencing on pooled genomic DNA of Sisymbrium austriacum (Brassicaceae).

Vandepitte K, Honnay O, Mergeay J, Breyne P, Roldán-Ruiz I, De Meyer T.

Mol Ecol Resour. 2013 Mar;13(2):269-75. doi: 10.1111/1755-0998.12039. Epub 2012 Dec 11.

PMID:
23231662
14.

Plastome sequences of two New World bamboos--Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)--extend phylogenomic understanding of Bambusoideae.

Burke SV, Grennan CP, Duvall MR.

Am J Bot. 2012 Dec;99(12):1951-61. doi: 10.3732/ajb.1200365. Epub 2012 Dec 5.

15.

Genetic relationships among 22 taxa of bamboo revealed by ISSR and EST-based random primers.

Mukherjee AK, Ratha S, Dhar S, Debata AK, Acharya PK, Mandal S, Panda PC, Mahapatra AK.

Biochem Genet. 2010 Dec;48(11-12):1015-25. doi: 10.1007/s10528-010-9390-8. Epub 2010 Oct 26.

PMID:
20976539
16.

Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis.

Wysocki WP, Clark LG, Attigala L, Ruiz-Sanchez E, Duvall MR.

BMC Evol Biol. 2015 Mar 18;15:50. doi: 10.1186/s12862-015-0321-5.

17.

Phylogeny of Morella rubra and Its Relatives (Myricaceae) and Genetic Resources of Chinese Bayberry Using RAD Sequencing.

Liu L, Jin X, Chen N, Li X, Li P, Fu C.

PLoS One. 2015 Oct 2;10(10):e0139840. doi: 10.1371/journal.pone.0139840. eCollection 2015.

18.

Quality and quantity of data recovered from massively parallel sequencing: Examples in Asparagales and Poaceae.

Steele PR, Hertweck KL, Mayfield D, McKain MR, Leebens-Mack J, Pires JC.

Am J Bot. 2012 Feb;99(2):330-48. doi: 10.3732/ajb.1100491. Epub 2012 Jan 30.

20.

Delimiting species boundaries within the Neotropical bamboo Otatea (Poaceae: Bambusoideae) using molecular, morphological and ecological data.

Ruiz-Sanchez E, Sosa V.

Mol Phylogenet Evol. 2010 Feb;54(2):344-56. doi: 10.1016/j.ympev.2009.10.035. Epub 2009 Nov 6.

PMID:
19897047

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