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Items: 1 to 20 of 173

1.

JBioWH: an open-source Java framework for bioinformatics data integration.

Vera R, Perez-Riverol Y, Perez S, Ligeti B, Kertész-Farkas A, Pongor S.

Database (Oxford). 2013 Jul 11;2013:bat051. doi: 10.1093/database/bat051. Print 2013.

2.

BioWarehouse: a bioinformatics database warehouse toolkit.

Lee TJ, Pouliot Y, Wagner V, Gupta P, Stringer-Calvert DW, Tenenbaum JD, Karp PD.

BMC Bioinformatics. 2006 Mar 23;7:170.

3.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

4.

Java-based application framework for visualization of gene regulatory region annotations.

Sun H, Davuluri RV.

Bioinformatics. 2004 Mar 22;20(5):727-34. Epub 2004 Jan 29.

PMID:
14751988
5.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

6.

Bioinformatics visualization and integration with open standards: the Bluejay genomic browser.

Turinsky AL, Ah-Seng AC, Gordon PM, Stromer JN, Taschuk ML, Xu EW, Sensen CW.

In Silico Biol. 2005;5(2):187-98.

PMID:
15972014
7.

GDPC: connecting researchers with multiple integrated data sources.

Casstevens TM, Buckler ES.

Bioinformatics. 2004 Nov 1;20(16):2839-40. Epub 2004 Apr 22.

PMID:
15105279
8.

Integration of gel-based proteome data with pProRep.

Laukens K, Matthiesen R, Lemière F, Esmans E, Onckelen HV, Jensen ON, Witters E.

Bioinformatics. 2006 Nov 15;22(22):2838-40. Epub 2006 Oct 10.

PMID:
17032679
9.

A knowledge discovery object model API for Java.

Zuyderduyn SD, Jones SJ.

BMC Bioinformatics. 2003 Oct 28;4:51.

10.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
11.

Automated programming for bioinformatics algorithm deployment.

Alterovitz G, Jiwaji A, Ramoni MF.

Bioinformatics. 2008 Feb 1;24(3):450-1. doi: 10.1093/bioinformatics/btm602. Epub 2008 Jan 3.

PMID:
18174185
12.

KMD: an open-source port of the ArrayExpress microarray database.

Mainguy JP, Macdonnell G, Bund S, Wild DL.

Appl Bioinformatics. 2004;3(4):257-60.

PMID:
15702957
13.

Semantic Web Service provision: a realistic framework for Bioinformatics programmers.

Gordon PM, Trinh Q, Sensen CW.

Bioinformatics. 2007 May 1;23(9):1178-80. Epub 2007 Mar 24.

PMID:
17384428
14.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.

PMID:
15572471
15.

BioMAJ: a flexible framework for databanks synchronization and processing.

Filangi O, Beausse Y, Assi A, Legrand L, Larré JM, Martin V, Collin O, Caron C, Leroy H, Allouche D.

Bioinformatics. 2008 Aug 15;24(16):1823-5. doi: 10.1093/bioinformatics/btn325. Epub 2008 Jun 30.

16.

OMSSAGUI: An open-source user interface component to configure and run the OMSSA search engine.

Tharakan R, Martens L, Van Eyk JE, Graham DR.

Proteomics. 2008 Jun;8(12):2376-8. doi: 10.1002/pmic.200701126.

17.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

18.

Cyclone: java-based querying and computing with Pathway/Genome databases.

Le Fèvre F, Smidtas S, Schächter V.

Bioinformatics. 2007 May 15;23(10):1299-300. Epub 2007 Mar 28.

PMID:
17392333
19.

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.

Côté RG, Jones P, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2006 Feb 28;7:97.

20.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

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