Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 99

1.

EGN: a wizard for construction of gene and genome similarity networks.

Halary S, McInerney JO, Lopez P, Bapteste E.

BMC Evol Biol. 2013 Jul 11;13:146. doi: 10.1186/1471-2148-13-146.

2.

Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli.

Beauregard-Racine J, Bicep C, Schliep K, Lopez P, Lapointe FJ, Bapteste E.

Biol Direct. 2011 Jul 20;6:39; discussion 39. doi: 10.1186/1745-6150-6-39.

3.

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution.

Dagan T, Artzy-Randrup Y, Martin W.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10039-44. doi: 10.1073/pnas.0800679105. Epub 2008 Jul 16.

4.

Large-scale analysis of plasmid relationships through gene-sharing networks.

Tamminen M, Virta M, Fani R, Fondi M.

Mol Biol Evol. 2012 Apr;29(4):1225-40. doi: 10.1093/molbev/msr292. Epub 2011 Nov 29.

5.

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network.

Brilli M, Mengoni A, Fondi M, Bazzicalupo M, Liò P, Fani R.

BMC Bioinformatics. 2008 Dec 21;9:551. doi: 10.1186/1471-2105-9-551.

6.
7.

What traits are carried on mobile genetic elements, and why?

Rankin DJ, Rocha EP, Brown SP.

Heredity (Edinb). 2011 Jan;106(1):1-10. doi: 10.1038/hdy.2010.24. Epub 2010 Mar 24. Review.

8.
9.

Phylogenomic networks.

Dagan T.

Trends Microbiol. 2011 Oct;19(10):483-91. doi: 10.1016/j.tim.2011.07.001. Epub 2011 Aug 3. Review.

PMID:
21820313
10.

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.

Than C, Ruths D, Nakhleh L.

BMC Bioinformatics. 2008 Jul 28;9:322. doi: 10.1186/1471-2105-9-322.

11.

Evolution of bacterial diversity and the origins of modularity.

Rainey PB, Cooper TF.

Res Microbiol. 2004 Jun;155(5):370-5.

PMID:
15207869
12.

Genome networks root the tree of life between prokaryotic domains.

Dagan T, Roettger M, Bryant D, Martin W.

Genome Biol Evol. 2010 Jul 12;2:379-92. doi: 10.1093/gbe/evq025.

13.

Conjugative plasmids: vessels of the communal gene pool.

Norman A, Hansen LH, Sørensen SJ.

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12;364(1527):2275-89. doi: 10.1098/rstb.2009.0037. Review.

14.

Network analyses structure genetic diversity in independent genetic worlds.

Halary S, Leigh JW, Cheaib B, Lopez P, Bapteste E.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):127-32. doi: 10.1073/pnas.0908978107. Epub 2009 Dec 10.

16.

Exploring the costs of horizontal gene transfer.

Baltrus DA.

Trends Ecol Evol. 2013 Aug;28(8):489-95. doi: 10.1016/j.tree.2013.04.002. Epub 2013 May 22. Review.

PMID:
23706556
17.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

18.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

19.

Directed networks reveal genomic barriers and DNA repair bypasses to lateral gene transfer among prokaryotes.

Popa O, Hazkani-Covo E, Landan G, Martin W, Dagan T.

Genome Res. 2011 Apr;21(4):599-609. doi: 10.1101/gr.115592.110. Epub 2011 Jan 26.

20.

Insights into the evolutionary process of genome degradation.

Andersson JO, Andersson SG.

Curr Opin Genet Dev. 1999 Dec;9(6):664-71. Review.

PMID:
10607609
Items per page

Supplemental Content

Write to the Help Desk