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Items: 1 to 20 of 119

1.

The advantages of SMRT sequencing.

Roberts RJ, Carneiro MO, Schatz MC.

Genome Biol. 2013 Jul 3;14(7):405. doi: 10.1186/gb-2013-14-6-405. Erratum in: Genome Biol. 2017 Aug 16;18(1):156.

2.

SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.

Stadermann KB, Weisshaar B, Holtgräwe D.

BMC Bioinformatics. 2015 Sep 16;16:295. doi: 10.1186/s12859-015-0726-6.

3.

[The principle and application of the single-molecule real-time sequencing technology].

Yanhu L, Lu W, Li Y.

Yi Chuan. 2015 Mar;37(3):259-68. doi: 10.16288/j.yczz.14-323. Review. Chinese.

PMID:
25787000
4.

Advances in whole genome sequencing technology.

Zhao J, Grant SF.

Curr Pharm Biotechnol. 2011 Feb 1;12(2):293-305. Review.

PMID:
21050163
5.

High-throughput sequencing technologies.

Reuter JA, Spacek DV, Snyder MP.

Mol Cell. 2015 May 21;58(4):586-97. doi: 10.1016/j.molcel.2015.05.004. Review.

6.

Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.

Lin HH, Liao YC.

PLoS One. 2015 Dec 7;10(12):e0144305. doi: 10.1371/journal.pone.0144305. eCollection 2015.

7.

Comprehensive Mitochondrial Genome Analysis by Massively Parallel Sequencing.

Palculict ME, Zhang VW, Wong LJ, Wang J.

Methods Mol Biol. 2016;1351:3-17. doi: 10.1007/978-1-4939-3040-1_1.

PMID:
26530670
8.

Multiplexed highly-accurate DNA sequencing of closely-related HIV-1 variants using continuous long reads from single molecule, real-time sequencing.

Dilernia DA, Chien JT, Monaco DC, Brown MP, Ende Z, Deymier MJ, Yue L, Paxinos EE, Allen S, Tirado-Ramos A, Hunter E.

Nucleic Acids Res. 2015 Nov 16;43(20):e129. doi: 10.1093/nar/gkv630. Epub 2015 Jun 22.

9.

LSCplus: a fast solution for improving long read accuracy by short read alignment.

Hu R, Sun G, Sun X.

BMC Bioinformatics. 2016 Nov 9;17(1):451.

10.

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.

Berlin K, Koren S, Chin CS, Drake JP, Landolin JM, Phillippy AM.

Nat Biotechnol. 2015 Jun;33(6):623-30. doi: 10.1038/nbt.3238. Epub 2015 May 25. Erratum in: Nat Biotechnol. 2015 Oct;33(10):1109.

PMID:
26006009
11.

Genome assembly using Nanopore-guided long and error-free DNA reads.

Madoui MA, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, Lemainque A, Wincker P, Aury JM.

BMC Genomics. 2015 Apr 20;16:327. doi: 10.1186/s12864-015-1519-z.

12.

SMRT Sequencing for Parallel Analysis of Multiple Targets and Accurate SNP Phasing.

Guo X, Lehner K, O'Connell K, Zhang J, Dave SS, Jinks-Robertson S.

G3 (Bethesda). 2015 Oct 23;5(12):2801-8. doi: 10.1534/g3.115.023317.

13.

Towards allele-level human leucocyte antigens genotyping - assessing two next-generation sequencing platforms: Ion Torrent Personal Genome Machine and Illumina MiSeq.

Duke JL, Lind C, Mackiewicz K, Ferriola D, Papazoglou A, Derbeneva O, Wallace D, Monos DS.

Int J Immunogenet. 2015 Oct;42(5):346-58. doi: 10.1111/iji.12213. Epub 2015 Jun 27.

PMID:
26119888
14.

MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.

Pan W, Chen B, Xu Y.

Interdiscip Sci. 2015 Dec;7(4):405-13. doi: 10.1007/s12539-015-0281-x. Epub 2015 Aug 21.

PMID:
26293485
15.

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing.

Doi K, Monjo T, Hoang PH, Yoshimura J, Yurino H, Mitsui J, Ishiura H, Takahashi Y, Ichikawa Y, Goto J, Tsuji S, Morishita S.

Bioinformatics. 2014 Mar 15;30(6):815-22. doi: 10.1093/bioinformatics/btt647. Epub 2013 Nov 8.

16.

Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes.

Shin SC, Ahn DH, Kim SJ, Lee H, Oh TJ, Lee JE, Park H.

PLoS One. 2013 Jul 23;8(7):e68824. doi: 10.1371/journal.pone.0068824. Print 2013.

17.

The role of replicates for error mitigation in next-generation sequencing.

Robasky K, Lewis NE, Church GM.

Nat Rev Genet. 2014 Jan;15(1):56-62. doi: 10.1038/nrg3655. Epub 2013 Dec 10. Review.

18.

Oxford Nanopore MinION Sequencing and Genome Assembly.

Lu H, Giordano F, Ning Z.

Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17. Review.

19.

SMRT Sequencing of Long Tandem Nucleotide Repeats in SCA10 Reveals Unique Insight of Repeat Expansion Structure.

McFarland KN, Liu J, Landrian I, Godiska R, Shanker S, Yu F, Farmerie WG, Ashizawa T.

PLoS One. 2015 Aug 21;10(8):e0135906. doi: 10.1371/journal.pone.0135906. eCollection 2015.

20.

Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.

Fang CH, Chang YJ, Chung WC, Hsieh PH, Lin CY, Ho JM.

BMC Genomics. 2015;16 Suppl 12:S9. doi: 10.1186/1471-2164-16-S12-S9. Epub 2015 Dec 9.

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