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Items: 1 to 20 of 185

1.

Towards a whole-cell modeling approach for synthetic biology.

Purcell O, Jain B, Karr JR, Covert MW, Lu TK.

Chaos. 2013 Jun;23(2):025112. doi: 10.1063/1.4811182.

2.

Tools and Principles for Microbial Gene Circuit Engineering.

Bradley RW, Buck M, Wang B.

J Mol Biol. 2016 Feb 27;428(5 Pt B):862-88. doi: 10.1016/j.jmb.2015.10.004. Review.

3.

Computer-aided design of biological circuits using TinkerCell.

Chandran D, Bergmann FT, Sauro HM.

Bioeng Bugs. 2010 Jul-Aug;1(4):274-81. doi: 10.4161/bbug.1.4.12506.

4.

Oscillations by minimal bacterial suicide circuits reveal hidden facets of host-circuit physiology.

Marguet P, Tanouchi Y, Spitz E, Smith C, You L.

PLoS One. 2010 Jul 30;5(7):e11909. doi: 10.1371/journal.pone.0011909.

5.

Synthetic biology and metabolic engineering.

Stephanopoulos G.

ACS Synth Biol. 2012 Nov 16;1(11):514-25. doi: 10.1021/sb300094q. Review.

PMID:
23656228
6.

Dealing with the genetic load in bacterial synthetic biology circuits: convergences with the Ohm's law.

Carbonell-Ballestero M, Garcia-Ramallo E, Montañez R, Rodriguez-Caso C, Macía J.

Nucleic Acids Res. 2016 Jan 8;44(1):496-507. doi: 10.1093/nar/gkv1280.

7.

A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits.

Chiang AW, Hwang MJ.

BMC Bioinformatics. 2013;14 Suppl 16:S5. doi: 10.1186/1471-2105-14-S16-S5.

8.

Therapeutic synthetic gene networks.

Karlsson M, Weber W.

Curr Opin Biotechnol. 2012 Oct;23(5):703-11. doi: 10.1016/j.copbio.2012.01.003. Review.

PMID:
22305476
9.

Synthetic circuits, devices and modules.

Zhang H, Jiang T.

Protein Cell. 2010 Nov;1(11):974-8. doi: 10.1007/s13238-010-0133-8. Review.

10.

Engineering scalable biological systems.

Lu TK.

Bioeng Bugs. 2010 Nov-Dec;1(6):378-84. doi: 10.4161/bbug.1.6.13086.

11.

Synthetic biology: an emerging engineering discipline.

Cheng AA, Lu TK.

Annu Rev Biomed Eng. 2012;14:155-78. doi: 10.1146/annurev-bioeng-071811-150118. Review.

PMID:
22577777
12.

Automatic design of digital synthetic gene circuits.

Marchisio MA, Stelling J.

PLoS Comput Biol. 2011 Feb;7(2):e1001083. doi: 10.1371/journal.pcbi.1001083.

13.

Foundations and Emerging Paradigms for Computing in Living Cells.

Ma KC, Perli SD, Lu TK.

J Mol Biol. 2016 Feb 27;428(5 Pt B):893-915. doi: 10.1016/j.jmb.2016.02.018.

PMID:
26908220
14.

AutoBioCAD: full biodesign automation of genetic circuits.

Rodrigo G, Jaramillo A.

ACS Synth Biol. 2013 May 17;2(5):230-6. doi: 10.1021/sb300084h.

PMID:
23654253
15.

Layering genetic circuits to build a single cell, bacterial half adder.

Wong A, Wang H, Poh CL, Kitney RI.

BMC Biol. 2015 Jun 16;13:40. doi: 10.1186/s12915-015-0146-0.

16.

Using computational modeling and experimental synthetic perturbations to probe biological circuits.

Porter JR, Batchelor E.

Methods Mol Biol. 2015;1244:259-76. doi: 10.1007/978-1-4939-1878-2_12.

PMID:
25487101
17.

Computational design approaches and tools for synthetic biology.

MacDonald JT, Barnes C, Kitney RI, Freemont PS, Stan GB.

Integr Biol (Camb). 2011 Feb;3(2):97-108. doi: 10.1039/c0ib00077a. Review.

PMID:
21258712
18.

Engineering and control of biological systems: A new way to tackle complex diseases.

Menolascina F, Siciliano V, di Bernardo D.

FEBS Lett. 2012 Jul 16;586(15):2122-8. doi: 10.1016/j.febslet.2012.04.050. Review.

19.

Accurate predictions of genetic circuit behavior from part characterization and modular composition.

Davidsohn N, Beal J, Kiani S, Adler A, Yaman F, Li Y, Xie Z, Weiss R.

ACS Synth Biol. 2015 Jun 19;4(6):673-81. doi: 10.1021/sb500263b.

PMID:
25369267
20.

Synthetic Biology: A Unifying View and Review Using Analog Circuits.

Teo JJ, Woo SS, Sarpeshkar R.

IEEE Trans Biomed Circuits Syst. 2015 Aug;9(4):453-74. Review.

PMID:
26372648
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