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Items: 1 to 20 of 142

1.

Genome-wide annotation and quantitation of translation by ribosome profiling.

Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.

Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.18. doi: 10.1002/0471142727.mb0418s103.

2.

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments.

Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.

Nat Protoc. 2012 Jul 26;7(8):1534-50. doi: 10.1038/nprot.2012.086.

3.

Genome-wide translational profiling by ribosome footprinting.

Ingolia NT.

Methods Enzymol. 2010;470:119-42. doi: 10.1016/S0076-6879(10)70006-9. Epub 2010 Mar 1.

PMID:
20946809
4.

Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.

Michel AM, Baranov PV.

Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90. doi: 10.1002/wrna.1172. Epub 2013 May 20. Review. Erratum in: Wiley Interdiscip Rev RNA. 2017 Sep;8(5):.

5.

Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling.

Yang Z, Cao S, Martens CA, Porcella SF, Xie Z, Ma M, Shen B, Moss B.

J Virol. 2015 Jul;89(13):6874-86. doi: 10.1128/JVI.00528-15. Epub 2015 Apr 22.

6.

Simple and inexpensive ribosome profiling analysis of mRNA translation.

Reid DW, Shenolikar S, Nicchitta CV.

Methods. 2015 Dec;91:69-74. doi: 10.1016/j.ymeth.2015.07.003. Epub 2015 Jul 8.

7.

A rapid ribosome profiling method elucidates chloroplast ribosome behavior in vivo.

Zoschke R, Watkins KP, Barkan A.

Plant Cell. 2013 Jun;25(6):2265-75. doi: 10.1105/tpc.113.111567. Epub 2013 Jun 4.

8.

Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.

Spealman P, Wang H, May G, Kingsford C, McManus CJ.

Methods Mol Biol. 2016;1358:71-97. doi: 10.1007/978-1-4939-3067-8_5.

PMID:
26463378
9.

Ribosome profiling: a tool for quantitative evaluation of dynamics in mRNA translation.

Juntawong P, Hummel M, Bazin J, Bailey-Serres J.

Methods Mol Biol. 2015;1284:139-73. doi: 10.1007/978-1-4939-2444-8_7.

PMID:
25757771
10.

Ribosome Footprint Profiling of Translation throughout the Genome.

Ingolia NT.

Cell. 2016 Mar 24;165(1):22-33. doi: 10.1016/j.cell.2016.02.066.

11.

Ribosomal profiling adds new coding sequences to the proteome.

Mumtaz MA, Couso JP.

Biochem Soc Trans. 2015 Dec;43(6):1271-6. doi: 10.1042/BST20150170. Review.

PMID:
26614672
12.

Translation Analysis at the Genome Scale by Ribosome Profiling.

Baudin-Baillieu A, Hatin I, Legendre R, Namy O.

Methods Mol Biol. 2016;1361:105-24. doi: 10.1007/978-1-4939-3079-1_7. Review.

PMID:
26483019
13.

Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling.

Dalley BK, Baird L, Howard MT.

Methods Mol Biol. 2018;1661:103-123. doi: 10.1007/978-1-4939-7258-6_8.

PMID:
28917040
14.

Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames.

Janich P, Arpat AB, Castelo-Szekely V, Lopes M, Gatfield D.

Genome Res. 2015 Dec;25(12):1848-59. doi: 10.1101/gr.195404.115. Epub 2015 Oct 20.

15.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

16.

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.

Ingolia NT, Lareau LF, Weissman JS.

Cell. 2011 Nov 11;147(4):789-802. doi: 10.1016/j.cell.2011.10.002. Epub 2011 Nov 3.

17.

The extent of ribosome queuing in budding yeast.

Diament A, Feldman A, Schochet E, Kupiec M, Arava Y, Tuller T.

PLoS Comput Biol. 2018 Jan 29;14(1):e1005951. doi: 10.1371/journal.pcbi.1005951. eCollection 2018 Jan.

18.

Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries.

Lecanda A, Nilges BS, Sharma P, Nedialkova DD, Schwarz J, Vaquerizas JM, Leidel SA.

Methods. 2016 Sep 1;107:89-97. doi: 10.1016/j.ymeth.2016.07.011. Epub 2016 Jul 19.

19.

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.

Irigoyen N, Firth AE, Jones JD, Chung BY, Siddell SG, Brierley I.

PLoS Pathog. 2016 Feb 26;12(2):e1005473. doi: 10.1371/journal.ppat.1005473. eCollection 2016 Feb.

20.

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.

Science. 2009 Apr 10;324(5924):218-23. doi: 10.1126/science.1168978. Epub 2009 Feb 12.

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