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Items: 1 to 20 of 201

1.

Identification of essential proteins from weighted protein-protein interaction networks.

Li M, Wang JX, Wang H, Pan Y.

J Bioinform Comput Biol. 2013 Jun;11(3):1341002. doi: 10.1142/S0219720013410023. Epub 2013 Feb 25.

PMID:
23796179
2.

A new method for the discovery of essential proteins.

Zhang X, Xu J, Xiao WX.

PLoS One. 2013;8(3):e58763. doi: 10.1371/journal.pone.0058763. Epub 2013 Mar 21.

3.

A local average connectivity-based method for identifying essential proteins from the network level.

Li M, Wang J, Chen X, Wang H, Pan Y.

Comput Biol Chem. 2011 Jun;35(3):143-50. doi: 10.1016/j.compbiolchem.2011.04.002. Epub 2011 Apr 30.

PMID:
21704260
4.

A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks.

Li M, Lu Y, Wang J, Wu FX, Pan Y.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Mar-Apr;12(2):372-83. doi: 10.1109/TCBB.2014.2361350.

PMID:
26357224
5.

Effective identification of essential proteins based on priori knowledge, network topology and gene expressions.

Li M, Zheng R, Zhang H, Wang J, Pan Y.

Methods. 2014 Jun 1;67(3):325-33. doi: 10.1016/j.ymeth.2014.02.016. Epub 2014 Feb 21.

PMID:
24565748
6.

An ensemble framework for identifying essential proteins.

Zhang X, Xiao W, Acencio ML, Lemke N, Wang X.

BMC Bioinformatics. 2016 Aug 25;17:322. doi: 10.1186/s12859-016-1166-7.

7.

Identification of essential proteins based on edge clustering coefficient.

Wang J, Li M, Wang H, Pan Y.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jul-Aug;9(4):1070-80. doi: 10.1109/TCBB.2011.147.

PMID:
22084147
8.

Identifying essential proteins from active PPI networks constructed with dynamic gene expression.

Xiao Q, Wang J, Peng X, Wu FX, Pan Y.

BMC Genomics. 2015;16 Suppl 3:S1. doi: 10.1186/1471-2164-16-S3-S1. Epub 2015 Jan 29.

9.

A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data.

Li M, Zhang H, Wang JX, Pan Y.

BMC Syst Biol. 2012 Mar 10;6:15. doi: 10.1186/1752-0509-6-15.

10.

Localized network centrality and essentiality in the yeast-protein interaction network.

Park K, Kim D.

Proteomics. 2009 Nov;9(22):5143-54. doi: 10.1002/pmic.200900357.

PMID:
19771559
11.
12.

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network.

Mistry D, Wise RP, Dickerson JA.

PLoS One. 2017 Nov 9;12(11):e0187091. doi: 10.1371/journal.pone.0187091. eCollection 2017.

13.

Prediction of essential proteins based on overlapping essential modules.

Zhao B, Wang J, Li M, Wu FX, Pan Y.

IEEE Trans Nanobioscience. 2014 Dec;13(4):415-24. doi: 10.1109/TNB.2014.2337912. Epub 2014 Aug 7.

PMID:
25122840
14.

A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks.

Wang J, Li M, Chen J, Pan Y.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):607-20. doi: 10.1109/TCBB.2010.75.

PMID:
20733244
15.

Identification of Essential Proteins Based on a New Combination of Local Interaction Density and Protein Complexes.

Luo J, Qi Y.

PLoS One. 2015 Jun 30;10(6):e0131418. doi: 10.1371/journal.pone.0131418. eCollection 2015.

16.

A New Method for Identifying Essential Proteins Based on Network Topology Properties and Protein Complexes.

Qin C, Sun Y, Dong Y.

PLoS One. 2016 Aug 16;11(8):e0161042. doi: 10.1371/journal.pone.0161042. eCollection 2016.

17.

CytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networks.

Tang Y, Li M, Wang J, Pan Y, Wu FX.

Biosystems. 2015 Jan;127:67-72. doi: 10.1016/j.biosystems.2014.11.005. Epub 2014 Nov 15.

PMID:
25451770
18.

Prediction of Essential Proteins Based on Local Interaction Density.

Qi Y, Luo J.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Nov-Dec;13(6):1170-1182. doi: 10.1109/TCBB.2015.2509989. Epub 2015 Dec 17.

PMID:
26701891
19.

Why do hubs in the yeast protein interaction network tend to be essential: reexamining the connection between the network topology and essentiality.

Zotenko E, Mestre J, O'Leary DP, Przytycka TM.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000140. doi: 10.1371/journal.pcbi.1000140.

20.

Examination of the relationship between essential genes in PPI network and hub proteins in reverse nearest neighbor topology.

Ning K, Ng HK, Srihari S, Leong HW, Nesvizhskii AI.

BMC Bioinformatics. 2010 Oct 12;11:505. doi: 10.1186/1471-2105-11-505.

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