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Items: 1 to 20 of 86

1.

UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.

Hu Y, Roesel C, Flockhart I, Perkins L, Perrimon N, Mohr SE.

Genetics. 2013 Sep;195(1):37-45. doi: 10.1534/genetics.113.151340. Epub 2013 Jun 21.

2.

Functional genetics in the post-genomics era: building a better roadmap in Drosophila.

Kulathinal RJ.

Genetics. 2013 Sep;195(1):7-8. doi: 10.1534/genetics.113.156497.

3.

Functional genetics in the post-genomics era: building a better roadmap in Drosophila.

Kulathinal RJ.

G3 (Bethesda). 2013 Sep 4;3(9):1451-2. doi: 10.1534/g3.113.007351.

4.

FlyRNAi.org--the database of the Drosophila RNAi screening center: 2012 update.

Flockhart IT, Booker M, Hu Y, McElvany B, Gilly Q, Mathey-Prevot B, Perrimon N, Mohr SE.

Nucleic Acids Res. 2012 Jan;40(Database issue):D715-9. doi: 10.1093/nar/gkr953. Epub 2011 Nov 8.

5.

FlyPrimerBank: an online database for Drosophila melanogaster gene expression analysis and knockdown evaluation of RNAi reagents.

Hu Y, Sopko R, Foos M, Kelley C, Flockhart I, Ammeux N, Wang X, Perkins L, Perrimon N, Mohr SE.

G3 (Bethesda). 2013 Sep 4;3(9):1607-16. doi: 10.1534/g3.113.007021.

6.

E-RNAi: a web application for the multi-species design of RNAi reagents--2010 update.

Horn T, Boutros M.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W332-9. doi: 10.1093/nar/gkq317. Epub 2010 May 5.

7.

Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis.

Yilmazel B, Hu Y, Sigoillot F, Smith JA, Shamu CE, Perrimon N, Mohr SE.

BMC Bioinformatics. 2014 Jun 17;15:192. doi: 10.1186/1471-2105-15-192.

8.

GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update.

Schmidt EE, Pelz O, Buhlmann S, Kerr G, Horn T, Boutros M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D1021-6. doi: 10.1093/nar/gks1170. Epub 2012 Nov 27.

9.

FlyRNAi: the Drosophila RNAi screening center database.

Flockhart I, Booker M, Kiger A, Boutros M, Armknecht S, Ramadan N, Richardson K, Xu A, Perrimon N, Mathey-Prevot B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D489-94.

10.

The FLIGHT Drosophila RNAi database: 2010 update.

Sims D, Bursteinas B, Jain E, Gao Q, Baum B, Zvelebil M.

Fly (Austin). 2010 Oct-Dec;4(4):344-8. doi: 10.4161/fly.4.4.13303. Epub 2010 Oct 1.

11.

ATARiS: computational quantification of gene suppression phenotypes from multisample RNAi screens.

Shao DD, Tsherniak A, Gopal S, Weir BA, Tamayo P, Stransky N, Schumacher SE, Zack TI, Beroukhim R, Garraway LA, Margolin AA, Root DE, Hahn WC, Mesirov JP.

Genome Res. 2013 Apr;23(4):665-78. doi: 10.1101/gr.143586.112. Epub 2012 Dec 26.

12.

FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update.

Hu Y, Comjean A, Roesel C, Vinayagam A, Flockhart I, Zirin J, Perkins L, Perrimon N, Mohr SE.

Nucleic Acids Res. 2017 Jan 4;45(D1):D672-D678. doi: 10.1093/nar/gkw977. Epub 2016 Oct 23.

13.

GenomeRNAi: a database for cell-based RNAi phenotypes. 2009 update.

Gilsdorf M, Horn T, Arziman Z, Pelz O, Kiner E, Boutros M.

Nucleic Acids Res. 2010 Jan;38(Database issue):D448-52. doi: 10.1093/nar/gkp1038. Epub 2009 Nov 12.

14.

GenomeRNAi: a database for cell-based RNAi phenotypes.

Horn T, Arziman Z, Berger J, Boutros M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D492-7. Epub 2006 Nov 28.

15.

RNAiAtlas: a database for RNAi (siRNA) libraries and their specificity.

Mazur S, Csucs G, Kozak K.

Database (Oxford). 2012 Jun 14;2012:bas027. doi: 10.1093/database/bas027. Print 2012.

16.

Reagent and Data Resources for Investigation of RNA Binding Protein Functions in Drosophila melanogaster Cultured Cells.

Mohr SE, Hu Y, Rudd K, Buckner M, Gilly Q, Foster B, Sierzputowska K, Comjean A, Ye B, Perrimon N.

G3 (Bethesda). 2015 Jul 21;5(9):1919-24. doi: 10.1534/g3.115.019364.

17.

Validating RNAi phenotypes in Drosophila using a synthetic RNAi-resistant transgene.

Jonchere V, Bennett D.

PLoS One. 2013 Aug 8;8(8):e70489. doi: 10.1371/journal.pone.0070489. eCollection 2013.

18.

Computer-assisted annotation of small RNA transcriptomes.

Ortogero N, Hennig GW, Luong D, Yan W.

Methods Mol Biol. 2015;1218:353-64. doi: 10.1007/978-1-4939-1538-5_22.

PMID:
25319663
19.

Design and evaluation of genome-wide libraries for RNA interference screens.

Horn T, Sandmann T, Boutros M.

Genome Biol. 2010;11(6):R61. doi: 10.1186/gb-2010-11-6-r61. Epub 2010 Jun 15.

20.

E-RNAi: a web application to design optimized RNAi constructs.

Arziman Z, Horn T, Boutros M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W582-8.

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