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Items: 1 to 20 of 87

1.

Ancient cis-regulatory constraints and the evolution of genome architecture.

Irimia M, Maeso I, Roy SW, Fraser HB.

Trends Genet. 2013 Sep;29(9):521-8. doi: 10.1016/j.tig.2013.05.008. Epub 2013 Jun 18. Review.

PMID:
23791467
2.

Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints.

Irimia M, Tena JJ, Alexis MS, Fernandez-Miñan A, Maeso I, Bogdanovic O, de la Calle-Mustienes E, Roy SW, Gómez-Skarmeta JL, Fraser HB.

Genome Res. 2012 Dec;22(12):2356-67. doi: 10.1101/gr.139725.112. Epub 2012 Jun 21.

3.

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.

Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G.

Genome Res. 2009 Nov;19(11):2036-51. doi: 10.1101/gr.093237.109. Epub 2009 Aug 24.

4.

The identification and functional characterisation of conserved regulatory elements in developmental genes.

Dickmeis T, Müller F.

Brief Funct Genomic Proteomic. 2005 Feb;3(4):332-50. Review.

PMID:
15814024
5.

Genomics. Mmu 16--comparative genomic highlights.

Copeland NG, Jenkins NA, O'Brien SJ.

Science. 2002 May 31;296(5573):1617-8. No abstract available.

PMID:
12040165
6.

Cis-regulatory characterization of sequence conservation surrounding the Hox4 genes.

Punnamoottil B, Herrmann C, Pascual-Anaya J, D'Aniello S, Garcia-Fernàndez J, Akalin A, Becker TS, Rinkwitz S.

Dev Biol. 2010 Apr 15;340(2):269-82. doi: 10.1016/j.ydbio.2010.01.035. Epub 2010 Feb 6.

7.

Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.

Ahituv N, Prabhakar S, Poulin F, Rubin EM, Couronne O.

Hum Mol Genet. 2005 Oct 15;14(20):3057-63. Epub 2005 Sep 9.

PMID:
16155111
8.

Evolution of cis-regulatory sequence and function in Diptera.

Wittkopp PJ.

Heredity (Edinb). 2006 Sep;97(3):139-47. Epub 2006 Jul 19. Review.

9.

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence.

Wittkopp PJ, Kalay G.

Nat Rev Genet. 2011 Dec 6;13(1):59-69. doi: 10.1038/nrg3095. Review.

PMID:
22143240
10.

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes.

Chatterjee S, Bourque G, Lufkin T.

BMC Dev Biol. 2011 Oct 20;11:63. doi: 10.1186/1471-213X-11-63.

11.

Comparative genome analysis delimits a chromosomal domain and identifies key regulatory elements in the alpha globin cluster.

Flint J, Tufarelli C, Peden J, Clark K, Daniels RJ, Hardison R, Miller W, Philipsen S, Tan-Un KC, McMorrow T, Frampton J, Alter BP, Frischauf AM, Higgs DR.

Hum Mol Genet. 2001 Feb 15;10(4):371-82.

PMID:
11157800
12.

Implications of duplicated cis-regulatory elements in the evolution of metazoans: the DDI model or how simplicity begets novelty.

Jiménez-Delgado S, Pascual-Anaya J, Garcia-Fernàndez J.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):266-75. doi: 10.1093/bfgp/elp029. Epub 2009 Aug 3. Review.

PMID:
19651705
13.

Cis-regulation and conserved non-coding elements in amphioxus.

Beaster-Jones L.

Brief Funct Genomics. 2012 Mar;11(2):118-30. doi: 10.1093/bfgp/els006. Epub 2012 Mar 7. Review.

PMID:
22402505
14.

Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons.

Dong X, Navratilova P, Fredman D, Drivenes Ø, Becker TS, Lenhard B.

Nucleic Acids Res. 2010 Mar;38(4):1071-85. doi: 10.1093/nar/gkp1124. Epub 2009 Dec 6.

15.

Close sequence comparisons are sufficient to identify human cis-regulatory elements.

Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA.

Genome Res. 2006 Jul;16(7):855-63. Epub 2006 Jun 12.

16.

Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters.

Ghanem N, Jarinova O, Amores A, Long Q, Hatch G, Park BK, Rubenstein JL, Ekker M.

Genome Res. 2003 Apr;13(4):533-43.

17.

Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family.

Gillis WQ, St John J, Bowerman B, Schneider SQ.

BMC Evol Biol. 2009 Aug 20;9:207. doi: 10.1186/1471-2148-9-207.

18.
19.

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

Meireles-Filho AC, Stark A.

Curr Opin Genet Dev. 2009 Dec;19(6):565-70. doi: 10.1016/j.gde.2009.10.006. Epub 2009 Nov 11. Review.

PMID:
19913403
20.

Global control regions and regulatory landscapes in vertebrate development and evolution.

Spitz F, Duboule D.

Adv Genet. 2008;61:175-205. doi: 10.1016/S0065-2660(07)00006-5. Review.

PMID:
18282506

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