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Items: 1 to 20 of 123

1.

Annotated genes and nonannotated genomes: cross-species use of Gene Ontology in ecology and evolution research.

Primmer CR, Papakostas S, Leder EH, Davis MJ, Ragan MA.

Mol Ecol. 2013 Jun;22(12):3216-41. doi: 10.1111/mec.12309. Review.

PMID:
23763602
2.

AgBase: a functional genomics resource for agriculture.

McCarthy FM, Wang N, Magee GB, Nanduri B, Lawrence ML, Camon EB, Barrell DG, Hill DP, Dolan ME, Williams WP, Luthe DS, Bridges SM, Burgess SC.

BMC Genomics. 2006 Sep 8;7:229.

3.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

4.

The what, where, how and why of gene ontology--a primer for bioinformaticians.

du Plessis L, Skunca N, Dessimoz C.

Brief Bioinform. 2011 Nov;12(6):723-35. doi: 10.1093/bib/bbr002. Epub 2011 Feb 17.

5.

Interspecies gene function prediction using semantic similarity.

Yu G, Luo W, Fu G, Wang J.

BMC Syst Biol. 2016 Dec 23;10(Suppl 4):121. doi: 10.1186/s12918-016-0361-5.

6.

A procedure for assessing GO annotation consistency.

Dolan ME, Ni L, Camon E, Blake JA.

Bioinformatics. 2005 Jun;21 Suppl 1:i136-43.

PMID:
15961450
7.

Quality of computationally inferred gene ontology annotations.

Skunca N, Altenhoff A, Dessimoz C.

PLoS Comput Biol. 2012 May;8(5):e1002533. doi: 10.1371/journal.pcbi.1002533. Epub 2012 May 31.

8.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

9.

ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species.

Zeng V, Extavour CG.

Database (Oxford). 2012 Nov 23;2012:bas048. doi: 10.1093/database/bas048. Print 2012.

10.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

11.

Application of comparative biology in GO functional annotation: the mouse model.

Drabkin HJ, Christie KR, Dolan ME, Hill DP, Ni L, Sitnikov D, Blake JA.

Mamm Genome. 2015 Oct;26(9-10):574-83. doi: 10.1007/s00335-015-9580-0. Epub 2015 Jul 4.

12.

Cross-Ontology multi-level association rule mining in the Gene Ontology.

Manda P, Ozkan S, Wang H, McCarthy F, Bridges SM.

PLoS One. 2012;7(10):e47411. doi: 10.1371/journal.pone.0047411. Epub 2012 Oct 12.

13.

GOParGenPy: a high throughput method to generate gene ontology data matrices.

Kumar AA, Holm L, Toronen P.

BMC Bioinformatics. 2013 Aug 8;14:242. doi: 10.1186/1471-2105-14-242.

14.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

15.

Extracting Cross-Ontology Weighted Association Rules from Gene Ontology Annotations.

Agapito G, Milano M, Guzzi PH, Cannataro M.

IEEE/ACM Trans Comput Biol Bioinform. 2016 Mar-Apr;13(2):197-208. doi: 10.1109/TCBB.2015.2462348.

PMID:
27045823
16.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

17.
18.

Ontology annotation: mapping genomic regions to biological function.

Thomas PD, Mi H, Lewis S.

Curr Opin Chem Biol. 2007 Feb;11(1):4-11. Epub 2007 Jan 5. Review.

PMID:
17208035
19.

Large-scale protein annotation through gene ontology.

Xie H, Wasserman A, Levine Z, Novik A, Grebinskiy V, Shoshan A, Mintz L.

Genome Res. 2002 May;12(5):785-94.

20.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

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