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Large-scale analysis of the prevalence and geographic distribution of HIV-1 non-B variants in the United States.

Pyne MT, Hackett J Jr, Holzmayer V, Hillyard DR.

J Clin Microbiol. 2013 Aug;51(8):2662-9. doi: 10.1128/JCM.00880-13. Epub 2013 Jun 12.


Identification of new, emerging HIV-1 unique recombinant forms and drug resistant viruses circulating in Cameroon.

Ragupathy V, Zhao J, Wood O, Tang S, Lee S, Nyambi P, Hewlett I.

Virol J. 2011 Apr 23;8:185. doi: 10.1186/1743-422X-8-185.


HIV-1 subtype diversity among clinical specimens submitted for routine antiviral drug resistance testing in the United States.

Germer JJ, Wu P, Soderberg JD, Mandrekar JN, Yao JD.

Diagn Microbiol Infect Dis. 2015 Nov;83(3):257-60. doi: 10.1016/j.diagmicrobio.2015.07.014. Epub 2015 Jul 26.


Short communication: evidence of HIV type 1 complex and second generation recombinant strains among patients infected in 1997-2007 in France: ANRS CO06 PRIMO Cohort.

Galimand J, Frange P, Rouzioux C, Deveau C, Avettand-Fenoël V, Ghosn J, Lascoux C, Goujard C, Meyer L, Chaix ML.

AIDS Res Hum Retroviruses. 2010 Jun;26(6):645-51. doi: 10.1089/aid.2009.0201.


Most HIV type 1 non-B infections in the Spanish cohort of antiretroviral treatment-naïve HIV-infected patients (CoRIS) are due to recombinant viruses.

Yebra G, de Mulder M, Martín L, Rodríguez C, Labarga P, Viciana I, Berenguer J, Alemán MR, Pineda JA, García F, Holguín A; Cohort of the Spanish AIDS Research Network (CoRIS).

J Clin Microbiol. 2012 Feb;50(2):407-13. doi: 10.1128/JCM.05798-11. Epub 2011 Dec 7.


Detection of distinct human immunodeficiency virus type 1 circulating recombinant forms in northeast Brazil.

Santos LA, Monteiro-Cunha JP, Araujo AF, Brites C, Galvao-Castro B, Alcantara LC.

J Med Virol. 2011 Dec;83(12):2066-72. doi: 10.1002/jmv.22170.


Non-B HIV type 1 subtypes among men who have sex with men in Rome, Italy.

Giuliani M, Montieri S, Palamara G, Latini A, Alteri C, Perno CF, Santoro MM, Rezza G, Ciccozzi M.

AIDS Res Hum Retroviruses. 2009 Feb;25(2):157-64. doi: 10.1089/aid.2008.0175.


Comprehensive Characterization of HIV-1 Molecular Epidemiology and Demographic History in the Brazilian Region Most Heavily Affected by AIDS.

Gräf T, Machado Fritsch H, de Medeiros RM, Maletich Junqueira D, Esteves de Matos Almeida S, Pinto AR.

J Virol. 2016 Aug 26;90(18):8160-8. doi: 10.1128/JVI.00363-16. Print 2016 Sep 15.


Genetic characterization of diverse HIV-1 strains in an immigrant population living in New York City.

Lin HH, Gaschen BK, Collie M, El-Fishaway M, Chen Z, Korber BT, Beatrice ST, Zhang L.

J Acquir Immune Defic Syndr. 2006 Apr 1;41(4):399-404.


Molecular epidemiological analysis of paired pol/env sequences from Portuguese HIV type 1 patients.

Abecasis AB, Martins A, Costa I, Carvalho AP, Diogo I, Gomes P, Camacho RJ; Portuguese Hiv-1 Resistance Study Group.

AIDS Res Hum Retroviruses. 2011 Jul;27(7):803-5. doi: 10.1089/AID.2010.0312. Epub 2011 Feb 16.


Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM.

Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7.


Short communication: molecular epidemiology of HIV type 1 infection in Kazakhstan: CRF02_AG prevalence is increasing in the southeastern provinces.

Lapovok I, Kazennova E, Laga V, Vasilyev A, Utegenova A, Abishev A, Dzissyuk N, Tukeev M, Bobkova M.

AIDS Res Hum Retroviruses. 2014 Aug;30(8):769-74. doi: 10.1089/AID.2013.0291. Epub 2014 Jun 19.


[HIV-1 subtype distribution determined by phylogenetic analysis of pol gene sequences and automated subtyping tools among HIV-1 isolates from the Aegian Region of Turkey].

Uluer Biçeroğlu S, Altuğlu I, Nazli Zeka A, Gökengin D, Yazan Sertöz R.

Mikrobiyol Bul. 2014 Jul;48(3):420-8. Turkish.


HIV type 1 origin and transmission dynamics among different risk groups in sardinia: molecular epidemiology within the close boundaries of an Italian island.

Ciccozzi M, Madeddu G, Lo Presti A, Cella E, Giovanetti M, Budroni C, Babudieri S, Mura MS, Zehender G, Salemi M.

AIDS Res Hum Retroviruses. 2013 Feb;29(2):404-10. doi: 10.1089/AID.2012.0209. Epub 2012 Nov 5.


Phylogenetic and geospatial evaluation of HIV-1 subtype diversity at the largest HIV center in Rhode Island.

Chan PA, Reitsma MB, DeLong A, Boucek B, Nunn A, Salemi M, Kantor R.

Infect Genet Evol. 2014 Dec;28:358-66. doi: 10.1016/j.meegid.2014.03.027. Epub 2014 Apr 8.


Short communication: Emergence of novel A/G recombinant HIV-1 strains in Argentina.

Fernández MF, Golemba MD, Terrones C, Paradiso P, Nassif JC, Bologna R, Mangano A, Sen L, Aulicino PC.

AIDS Res Hum Retroviruses. 2015 Mar;31(3):293-7. doi: 10.1089/AID.2014.0196. Epub 2014 Dec 22.


Relatively high prevalence of drug resistance among antiretroviral-naive patients from Henan, Central China.

Li L, Sun B, Zeng H, Sun Z, Sun G, Yang R.

AIDS Res Hum Retroviruses. 2014 Feb;30(2):160-4. doi: 10.1089/AID.2013.0144. Epub 2013 Jul 24.


HIV-1 Genetic Diversity and Transmitted Drug Resistance Among Recently Infected Individuals at Men Who Have Sex with Men Sentinel Surveillance Points in Hebei Province, China.

Lu X, Kang X, Chen S, Zhao H, Liu Y, Zhao C, Zhang Y, Li J, Cui Z, Wang X.

AIDS Res Hum Retroviruses. 2015 Oct;31(10):1038-45. doi: 10.1089/AID.2015.0160. Epub 2015 Aug 17.


Increasing prevalence of non-clade B HIV-1 strains in heterosexual men and women, as monitored by analysis of reverse transcriptase and protease sequences.

Balotta C, Facchi G, Violin M, Van Dooren S, Cozzi-Lepri A, Forbici F, Bertoli A, Riva C, Senese D, Caramello P, Carnevale G, Rizzardini G, Cremonini L, Monno L, Rezza G, Perno CF, Ippolito G, d'Arminio-Monforte A, Vandamme AM, Moroni M; ICONA Study Group.

J Acquir Immune Defic Syndr. 2001 Aug 15;27(5):499-505.


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