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Items: 1 to 20 of 98

1.

Network2Canvas: network visualization on a canvas with enrichment analysis.

Tan CM, Chen EY, Dannenfelser R, Clark NR, Ma'ayan A.

Bioinformatics. 2013 Aug 1;29(15):1872-8. doi: 10.1093/bioinformatics/btt319. Epub 2013 Jun 7.

2.

Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets.

Duan Q, Wang Z, Fernandez NF, Rouillard AD, Tan CM, Benes CH, Ma'ayan A.

Bioinformatics. 2014 Nov 15;30(22):3289-90. doi: 10.1093/bioinformatics/btu526. Epub 2014 Aug 6.

3.

FNV: light-weight flash-based network and pathway viewer.

Dannenfelser R, Lachmann A, Szenk M, Ma'ayan A.

Bioinformatics. 2011 Apr 15;27(8):1181-2. doi: 10.1093/bioinformatics/btr098. Epub 2011 Feb 23.

4.

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool.

Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2013 Apr 15;14:128. doi: 10.1186/1471-2105-14-128.

5.

LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures.

Duan Q, Flynn C, Niepel M, Hafner M, Muhlich JL, Fernandez NF, Rouillard AD, Tan CM, Chen EY, Golub TR, Sorger PK, Subramanian A, Ma'ayan A.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W449-60. doi: 10.1093/nar/gku476. Epub 2014 Jun 6.

6.

NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks.

Hurley DG, Cursons J, Wang YK, Budden DM, Print CG, Crampin EJ.

Bioinformatics. 2015 Jan 15;31(2):277-8. doi: 10.1093/bioinformatics/btu612. Epub 2014 Sep 21. Erratum in: Bioinformatics. 2015 Jul 1;31(13):2015-240.

PMID:
25246431
7.

Drug-induced adverse events prediction with the LINCS L1000 data.

Wang Z, Clark NR, Ma'ayan A.

Bioinformatics. 2016 Aug 1;32(15):2338-45. doi: 10.1093/bioinformatics/btw168. Epub 2016 Apr 1.

PMID:
27153606
8.

DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks.

Xiong B, Liu K, Wu J, Burk DL, Jiang H, Shen J.

Bioinformatics. 2008 Sep 15;24(18):2117-8. doi: 10.1093/bioinformatics/btn389. Epub 2008 Jul 25.

PMID:
18658180
9.

ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks.

Li G, Li M, Zhang Y, Wang D, Li R, Guimerà R, Gao JT, Zhang MQ.

PLoS One. 2014 May 1;9(5):e94608. doi: 10.1371/journal.pone.0094608. eCollection 2014.

10.

AVIS: AJAX viewer of interactive signaling networks.

Berger SI, Iyengar R, Ma'ayan A.

Bioinformatics. 2007 Oct 15;23(20):2803-5. Epub 2007 Sep 12.

11.

Scribl: an HTML5 Canvas-based graphics library for visualizing genomic data over the web.

Miller CA, Anthony J, Meyer MM, Marth G.

Bioinformatics. 2013 Feb 1;29(3):381-3. doi: 10.1093/bioinformatics/bts677. Epub 2012 Nov 19.

12.

GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks.

Taylor A, Steinberg J, Andrews TS, Webber C.

Bioinformatics. 2015 Feb 1;31(3):442-4. doi: 10.1093/bioinformatics/btu669. Epub 2014 Oct 14.

13.

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.

Gundersen GW, Jones MR, Rouillard AD, Kou Y, Monteiro CD, Feldmann AS, Hu KS, Ma'ayan A.

Bioinformatics. 2015 Sep 15;31(18):3060-2. doi: 10.1093/bioinformatics/btv297. Epub 2015 May 13.

14.

Web GIS in practice VIII: HTML5 and the canvas element for interactive online mapping.

Boulos MN, Warren J, Gong J, Yue P.

Int J Health Geogr. 2010 Mar 3;9:14. doi: 10.1186/1476-072X-9-14.

15.

Expression2Kinases: mRNA profiling linked to multiple upstream regulatory layers.

Chen EY, Xu H, Gordonov S, Lim MP, Perkins MH, Ma'ayan A.

Bioinformatics. 2012 Jan 1;28(1):105-11. doi: 10.1093/bioinformatics/btr625. Epub 2011 Nov 10.

16.

ChiBE: interactive visualization and manipulation of BioPAX pathway models.

Babur O, Dogrusoz U, Demir E, Sander C.

Bioinformatics. 2010 Feb 1;26(3):429-31. doi: 10.1093/bioinformatics/btp665. Epub 2009 Dec 9.

17.

NetworkAnalyst--integrative approaches for protein-protein interaction network analysis and visual exploration.

Xia J, Benner MJ, Hancock RE.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W167-74. doi: 10.1093/nar/gku443. Epub 2014 May 26.

18.

EnrichNet: network-based gene set enrichment analysis.

Glaab E, Baudot A, Krasnogor N, Schneider R, Valencia A.

Bioinformatics. 2012 Sep 15;28(18):i451-i457. doi: 10.1093/bioinformatics/bts389.

19.

Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.

Merico D, Isserlin R, Stueker O, Emili A, Bader GD.

PLoS One. 2010 Nov 15;5(11):e13984. doi: 10.1371/journal.pone.0013984.

20.

A web-based protein interaction network visualizer.

Salazar GA, Meintjes A, Mazandu GK, Rapanoël HA, Akinola RO, Mulder NJ.

BMC Bioinformatics. 2014 May 6;15:129. doi: 10.1186/1471-2105-15-129.

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